GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000576-TA|BGIBMGA000576-PA|undefined
         (51 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas...    25   8.5  
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal...    25   8.5  
AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane cal...    25   8.5  
AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane cal...    25   8.5  

>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1237

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 20  TIVLMTPLMMELFGEEYQRNIRGE 43
           TIV  T +MM LF E   R I GE
Sbjct: 941 TIVFNTFVMMTLFNEINARKIHGE 964


>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform b protein.
          Length = 1234

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 20  TIVLMTPLMMELFGEEYQRNIRGE 43
           TIV  T +MM LF E   R I GE
Sbjct: 941 TIVFNTFVMMTLFNEINARKIHGE 964


>AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform a protein.
          Length = 1160

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 20  TIVLMTPLMMELFGEEYQRNIRGE 43
           TIV  T +MM LF E   R I GE
Sbjct: 941 TIVFNTFVMMTLFNEINARKIHGE 964


>AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform c protein.
          Length = 1137

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 20  TIVLMTPLMMELFGEEYQRNIRGE 43
           TIV  T +MM LF E   R I GE
Sbjct: 941 TIVFNTFVMMTLFNEINARKIHGE 964


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.144    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,211,960
Number of Sequences: 27539
Number of extensions: 32409
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 4
length of query: 51
length of database: 12,573,161
effective HSP length: 32
effective length of query: 19
effective length of database: 11,691,913
effective search space: 222146347
effective search space used: 222146347
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)