GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000576-TA|BGIBMGA000576-PA|undefined
         (51 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    19   3.7  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    19   4.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    19   4.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        19   6.4  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              19   6.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   6.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    18   8.5  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 19.4 bits (38), Expect = 3.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 12  ERFRERRE 19
           ERFR+RRE
Sbjct: 298 ERFRDRRE 305


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
          protein.
          Length = 128

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 6  LCWVLGERFRERRET 20
          +C++LGE F E + T
Sbjct: 11 VCFLLGEVFSEDKYT 25


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
          protein.
          Length = 128

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 6  LCWVLGERFRERRET 20
          +C++LGE F E + T
Sbjct: 11 VCFLLGEVFSEDKYT 25


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 6  LCWVLGERFRERRETIVLMTPLMMELFGEE 35
          +C   G RF E  E   ++   M +  GEE
Sbjct: 53 MCHKYGLRFEEVSEKYGILQNWMDKFRGEE 82


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 40  IRGEYGDEED 49
           I G+Y D+ED
Sbjct: 96  IEGQYHDDED 105


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 20  TIVLMTPLMMELFGE 34
           TIVLMT  +M L+ E
Sbjct: 254 TIVLMTMTLMTLWLE 268


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 24  MTPLMMELFGEEYQRNIR 41
           + PL+  +F  +Y+R  R
Sbjct: 376 LNPLIYTIFNLDYRRAFR 393


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.144    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,017
Number of Sequences: 429
Number of extensions: 578
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 51
length of database: 140,377
effective HSP length: 31
effective length of query: 20
effective length of database: 127,078
effective search space:  2541560
effective search space used:  2541560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.3 bits)
S2: 35 (18.2 bits)