GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000575-TA|BGIBMGA000575-PA|undefined
         (105 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CPG2 Cluster: Chromosome undetermined scaffold_23, wh...    31   5.9  
UniRef50_UPI0000660C13 Cluster: Homolog of Homo sapiens "Ran-bin...    30   7.8  
UniRef50_Q180U6 Cluster: Putative transcription antiterminator; ...    30   7.8  
UniRef50_Q23R56 Cluster: Putative uncharacterized protein; n=1; ...    30   7.8  

>UniRef50_A0CPG2 Cluster: Chromosome undetermined scaffold_23, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_23, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2189

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 62   ISKDTEKSIESNAHSS-IHIAPDDKEPQNQVVEHYGESSRQVK 103
            + KD E+ I+       ++  PDD++P+  V++  GES+++VK
Sbjct: 2147 LEKDAEEKIKCLEDDQFVYNDPDDQDPKVYVIKKEGESNKKVK 2189


>UniRef50_UPI0000660C13 Cluster: Homolog of Homo sapiens
           "Ran-binding protein 2; n=1; Takifugu rubripes|Rep:
           Homolog of Homo sapiens "Ran-binding protein 2 -
           Takifugu rubripes
          Length = 618

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query: 67  EKSIESNAHSSIHIAPDDKEPQNQVVEHYGESS 99
           +++++  A SSI+ +P    PQ + V H+GES+
Sbjct: 372 KEALDDTADSSIYASPLSSSPQRKKVCHFGEST 404


>UniRef50_Q180U6 Cluster: Putative transcription antiterminator;
           n=2; Clostridium difficile|Rep: Putative transcription
           antiterminator - Clostridium difficile (strain 630)
          Length = 633

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 64  KDTEKSIESNAHSSIHIAPDDKEPQNQVVEHYGESSRQV 102
           KDTE  +E  AH  I I    KE Q+ +V+ Y   +R +
Sbjct: 130 KDTELKLERKAHYGIKIEGSIKEIQSILVDSYFRGNRNI 168


>UniRef50_Q23R56 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 880

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 12  NSRQSMNKPNTPANMSDNQLNTHGSSKIFTMXXXXXXXXXXXXXXXXXAEISKDTEKSIE 71
           NS+QS N  ++  N S NQ ++ G+S +F                    + S +   + +
Sbjct: 601 NSKQSSNNNSSSQNNSSNQQSSTGNSSLFDRIKKKNNNSSSNVSNSNDRQYSNNGTNNSD 660

Query: 72  SNAHSSI--HIAPDDKEPQNQVVEHYGESSR 100
           +N  SS       D     N+  ++  ESSR
Sbjct: 661 NNKQSSNSGRYNKDQSPSTNKSSKYDKESSR 691


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.306    0.119    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,454,131
Number of Sequences: 1657284
Number of extensions: 2077462
Number of successful extensions: 5129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5127
Number of HSP's gapped (non-prelim): 4
length of query: 105
length of database: 575,637,011
effective HSP length: 82
effective length of query: 23
effective length of database: 439,739,723
effective search space: 10114013629
effective search space used: 10114013629
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 65 (30.3 bits)