GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000575-TA|BGIBMGA000575-PA|undefined
         (105 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   2.6  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   2.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   2.6  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 64  KDTEKSIESNAHSSIH 79
           ++ ++ IE   HSSIH
Sbjct: 90  QEKQQKIEQQTHSSIH 105


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 64  KDTEKSIESNAHSSIH 79
           ++ ++ IE   HSSIH
Sbjct: 241 QEKQQKIEQQTHSSIH 256


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 64  KDTEKSIESNAHSSIH 79
           ++ ++ IE   HSSIH
Sbjct: 300 QEKQQKIEQQTHSSIH 315


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.306    0.119    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,407
Number of Sequences: 317
Number of extensions: 432
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 105
length of database: 114,650
effective HSP length: 49
effective length of query: 56
effective length of database: 99,117
effective search space:  5550552
effective search space used:  5550552
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)