GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000575-TA|BGIBMGA000575-PA|undefined
         (105 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   2.5  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    24   4.4  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    24   4.4  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    24   5.8  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    23   7.6  

>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 6   IAAARGNSRQSMNKPNTPANMSDNQLNTH 34
           + + R N R S +KP+TP +  D  L T+
Sbjct: 240 LPSIRTNVRYSNSKPSTPLSPEDVDLGTY 268


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 5   IIAAARGNSRQSMNKPNTPANMSDNQLNTHGSSKI 39
           +I +  G+S  + N  N  +N S+N  NT  +  +
Sbjct: 508 LIGSFMGSSSNNSNSSNNNSNTSNNNSNTSNNESM 542


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 79  HIAPDDKEPQNQVVEHY 95
           HI+PD+ E   + V+HY
Sbjct: 601 HISPDEPEKIREAVKHY 617


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 68  KSIESNAHSSIHIAPDDKEPQNQVVEHYGE 97
           KS+  N H S+ ++ DD++  + + E +GE
Sbjct: 78  KSVSPN-HESLIVSSDDQKIIDDIYEKFGE 106


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 63  SKDTEKSIESNAHSSIHIAPDDKEPQNQ 90
           + DT K  E NA    ++  D+   QNQ
Sbjct: 385 NSDTPKFSEENARGWCNVLDDESSQQNQ 412


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.306    0.119    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 384,274
Number of Sequences: 5004
Number of extensions: 9705
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 5
length of query: 105
length of database: 2,362,478
effective HSP length: 63
effective length of query: 42
effective length of database: 2,047,226
effective search space: 85983492
effective search space used: 85983492
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 48 (23.4 bits)