GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000575-TA|BGIBMGA000575-PA|undefined
         (105 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565...    26   5.0  
04_03_0914 + 20788103-20789642,20790036-20790529                       26   6.6  
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296...    26   6.6  
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886...    26   6.6  
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348...    25   8.8  
10_08_0960 - 21853010-21853282,21854078-21854449,21854555-218548...    25   8.8  

>08_01_0656 +
           5652383-5653009,5653260-5653736,5654969-5655289,
           5655434-5655589,5656062-5656127,5656196-5656315
          Length = 588

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 60  AEISKDTEKSIESNAHSSIHIAPDDKEPQNQVVEHYGESSRQV 102
           +EI+ D +   +   H   H   DD + +NQ  EH GE   Q+
Sbjct: 405 SEIADDYDDEKQRQEHCEGHNPIDDYDDENQHEEH-GEEHNQI 446


>04_03_0914 + 20788103-20789642,20790036-20790529
          Length = 677

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 21  NTPANMSDNQLNTHGSSKIFTM 42
           NTP + ++N+  TH S K ++M
Sbjct: 340 NTPIDCTNNKNTTHSSDKFYSM 361


>02_05_0975 + 33227431-33227730,33228556-33228636,33228883-33229680,
            33230829-33231005,33231159-33231274,33231422-33231520,
            33231598-33232040,33232147-33232184,33232343-33232600,
            33233378-33233525,33233989-33234108,33234884-33234984,
            33235090-33235213,33235386-33235498,33236103-33236214,
            33236298-33236432,33236527-33236593,33236685-33236741,
            33236774-33236900,33237221-33237338,33237418-33237929
          Length = 1347

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 61   EISKDTEKSIESNAHSSIHIAPDDKE-PQNQVVEHYGESSR 100
            ++S  T+++  +NA ++ HI PD  E P ++  E   E +R
Sbjct: 1207 DVSPGTDQNQRTNAEANDHIDPDKMEVPDSEDEEAVHEDTR 1247


>01_05_0478 -
           22587881-22588021,22588126-22588266,22588436-22588643,
           22589199-22589238,22589425-22589647,22590826-22590970,
           22591053-22591156,22591298-22591396,22591506-22591684,
           22591948-22592167
          Length = 499

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 60  AEISKDTEKSIESNAHSSIHIAPDDKEPQNQVVEHYGESSRQVKM 104
           +E SK T+K+   +    +H + DD +  N+  +H    SR+  M
Sbjct: 317 SETSKKTDKAHRKDKELPVHRSDDDNDDDNE--DHQLTKSRKFSM 359


>11_01_0450 -
           3487464-3487844,3487883-3488268,3488883-3489033,
           3489132-3491102,3492090-3492149,3492240-3492436,
           3492678-3492963
          Length = 1143

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 66  TEKSIESNAHSSIHIAPDDKEPQNQVVEHYGESS 99
           T  S E+ A S I +AP+D E +  + E+  E S
Sbjct: 487 TLTSNENFAQSKIFVAPEDSESEGTISENLFEIS 520


>10_08_0960 -
           21853010-21853282,21854078-21854449,21854555-21854862,
           21854946-21855102
          Length = 369

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 64  KDTEKSIESNAHSSIHIAPDDKEPQNQ 90
           +DTE+ I+  A     + PDDKE   Q
Sbjct: 306 EDTEEMIQEGAEEEEVLEPDDKEADAQ 332


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.306    0.119    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,538
Number of Sequences: 37544
Number of extensions: 52915
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 6
length of query: 105
length of database: 14,793,348
effective HSP length: 72
effective length of query: 33
effective length of database: 12,090,180
effective search space: 398975940
effective search space used: 398975940
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 53 (25.4 bits)