GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000575-TA|BGIBMGA000575-PA|undefined
         (105 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.9  
SB_37831| Best HMM Match : MAM (HMM E-Value=0)                         25   9.1  

>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 5   IIAAARGNSRQSMNKPNTPANMSDNQLNTHGSSK 38
           +   ARG  ++S++      N+ +N  N HG++K
Sbjct: 249 VYGIARGKRKESLHNNALYNNVDNNSNNNHGNNK 282


>SB_37831| Best HMM Match : MAM (HMM E-Value=0)
          Length = 563

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 12  NSRQSMNKPNTPANMSDNQLNTH 34
           NS+  +N PN PAN++  Q   H
Sbjct: 341 NSKARLNSPNLPANVTCMQFYYH 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.306    0.119    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,670
Number of Sequences: 59808
Number of extensions: 65099
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 2
length of query: 105
length of database: 16,821,457
effective HSP length: 72
effective length of query: 33
effective length of database: 12,515,281
effective search space: 413004273
effective search space used: 413004273
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 53 (25.4 bits)