GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000575-TA|BGIBMGA000575-PA|undefined
         (105 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80443-4|AAD32268.1|  202|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical p...    26   4.5  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z68333-1|CAA92725.1|  405|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>U80443-4|AAD32268.1|  202|Caenorhabditis elegans Hypothetical
           protein C24A11.1 protein.
          Length = 202

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 18  NKPNTPANMSDNQLNTHGSSK 38
           N P TPA++SD ++N+  SS+
Sbjct: 158 NLPKTPADLSDREMNSAKSSE 178


>Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical
           protein T04A8.15 protein.
          Length = 718

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 62  ISKDTEKSIESNAHSSIHIAPDDKEPQNQVVEHYGESSRQ 101
           +  D E+ +E   H S+H  P  K   N  ++ + E S Q
Sbjct: 396 VEDDAEQIMEDKPHESVHSTP-QKPTTNVTMDSFDEWSNQ 434


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 66  TEKSIESNAHSSIHIAPDDKEPQNQVVEHYGESSRQ 101
           T+ +I+   H+      DD +P +  V+H G + R+
Sbjct: 174 TDTTIDHTGHNHRRRRSDDHDPNDPNVDHTGHNHRR 209


>Z68333-1|CAA92725.1|  405|Caenorhabditis elegans Hypothetical
          protein C05C12.1 protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 67 EKSIESNAHSSIHIAPDDKEPQNQVVEHYGESS 99
          E +   N    ++IA DDK    QVVE  GE +
Sbjct: 3  ENTASENDVEKVYIAIDDKIKGYQVVESIGEGA 35


>Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical
          protein F46F6.2 protein.
          Length = 1012

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 6  IAAARGNSRQSMNKPNTPANMSDNQLNTHGSS 37
          I    G+SR S + P+TP +  +   N  G+S
Sbjct: 10 INGMNGSSRHSADGPSTPTHSGNGHSNGEGNS 41


>Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical
          protein F46F6.2 protein.
          Length = 1012

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 6  IAAARGNSRQSMNKPNTPANMSDNQLNTHGSS 37
          I    G+SR S + P+TP +  +   N  G+S
Sbjct: 10 INGMNGSSRHSADGPSTPTHSGNGHSNGEGNS 41


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.306    0.119    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,884
Number of Sequences: 27539
Number of extensions: 49553
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 8
length of query: 105
length of database: 12,573,161
effective HSP length: 71
effective length of query: 34
effective length of database: 10,617,892
effective search space: 361008328
effective search space used: 361008328
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 53 (25.4 bits)