GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000575-TA|BGIBMGA000575-PA|undefined
         (105 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.25 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.25 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   5.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   7.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   9.4  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 0.25
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 9   ARGNSRQSMNKPNTPANMSDNQLNTHGSS 37
           A G S +S    N P N   NQ N H +S
Sbjct: 97  ATGLSNRSSTSSNDPKNQYKNQNNNHYTS 125


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.25
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 64  KDTEKSIESNAHSSIHIAPDD 84
           K    +IE N+H S+ + PD+
Sbjct: 549 KSGSNTIERNSHESVFVVPDE 569


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 62  ISKDTEKSIESNAHSSIH 79
           I + T+ S+E N H ++H
Sbjct: 713 IVEPTDVSVERNKHVALH 730


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 62  ISKDTEKSIESNAHSSIH 79
           I + T+ S+E N H ++H
Sbjct: 709 IVEPTDVSVERNKHVALH 726


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 18  NKPNTPANMSDNQLNTHGSSKI 39
           N   TP + S    N H SSK+
Sbjct: 203 NNDATPTDFSMGVKNNHVSSKV 224


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 21 NTPANMSDNQLNTHG 35
          N   N  +NQL THG
Sbjct: 43 NLLMNYENNQLPTHG 57


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 6   IAAARGNSRQSMNKPNTPANMSDNQ 30
           + A +    Q+  KP +P ++SD++
Sbjct: 245 VHATKPPKPQTKTKPTSPYHVSDHK 269


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.306    0.119    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,582
Number of Sequences: 429
Number of extensions: 456
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 105
length of database: 140,377
effective HSP length: 50
effective length of query: 55
effective length of database: 118,927
effective search space:  6540985
effective search space used:  6540985
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)