GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000575-TA|BGIBMGA000575-PA|undefined
         (105 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi...    29   0.61 
At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containi...    29   0.80 
At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containi...    29   0.80 
At1g19990.1 68414.m02504 expressed protein ; expression supporte...    28   1.1  
At3g52250.1 68416.m05742 myb family transcription factor contain...    27   2.4  
At4g12620.1 68417.m01988 replication control protein, putative s...    27   3.2  
At3g26850.2 68416.m03359 expressed protein                             25   9.9  
At3g26850.1 68416.m03358 expressed protein                             25   9.9  

>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 723

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 11/39 (28%), Positives = 25/39 (64%)

Query: 60  AEISKDTEKSIESNAHSSIHIAPDDKEPQNQVVEHYGES 98
           A+ +++++ S++ N  +S H+APD  +P+ ++     ES
Sbjct: 115 ADPARESKFSLQKNRRTSWHLAPDFADPETEIESKPEES 153


>At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 852

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 10  RGNSRQSMNKPNTPANMSDNQLNTH 34
           R  S Q +NK N+P ++S  +L+TH
Sbjct: 101 RFRSNQGLNKVNSPIHLSQGKLSTH 125


>At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 861

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 10  RGNSRQSMNKPNTPANMSDNQLNTH 34
           R  S Q +NK N+P ++S  +L+TH
Sbjct: 101 RFRSNQGLNKVNSPIHLSQGKLSTH 125


>At1g19990.1 68414.m02504 expressed protein ; expression supported
           by MPSS
          Length = 251

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 61  EISKDTEKSIESNAHSSIHIAPDDKEPQNQ 90
           EI KD EK   S  +SS+ ++ ++K+P+ +
Sbjct: 74  EIDKDDEKKPVSKRNSSVGVSKENKKPEKE 103


>At3g52250.1 68416.m05742 myb family transcription factor contains
            Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 13   SRQSMNKPNTPANMSDNQLNTHGSSKI 39
            ++  MN P +P NM+ + +N  GS+ +
Sbjct: 1204 AKMGMNSPTSPFNMNQDGVNQSGSANV 1230


>At4g12620.1 68417.m01988 replication control protein, putative
           similar to origin recognition complex subunit 1
           (Replication control protein 1)[Homo sapiens]
           SWISS-PROT:Q13415
          Length = 813

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/33 (33%), Positives = 23/33 (69%)

Query: 6   IAAARGNSRQSMNKPNTPANMSDNQLNTHGSSK 38
           +AA  G++R+++      A ++D++LNT+ S+K
Sbjct: 652 VAAISGDARRALEICRRAAEVADHRLNTNKSAK 684


>At3g26850.2 68416.m03359 expressed protein
          Length = 265

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/41 (24%), Positives = 23/41 (56%)

Query: 61  EISKDTEKSIESNAHSSIHIAPDDKEPQNQVVEHYGESSRQ 101
           E  K+ +   E N+H ++    D++ P+ +   H G+++R+
Sbjct: 129 EFGKNVDDGRECNSHETLTPNSDNENPKVENNVHEGDNTRK 169


>At3g26850.1 68416.m03358 expressed protein
          Length = 265

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/41 (24%), Positives = 23/41 (56%)

Query: 61  EISKDTEKSIESNAHSSIHIAPDDKEPQNQVVEHYGESSRQ 101
           E  K+ +   E N+H ++    D++ P+ +   H G+++R+
Sbjct: 129 EFGKNVDDGRECNSHETLTPNSDNENPKVENNVHEGDNTRK 169


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.306    0.119    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,981
Number of Sequences: 28952
Number of extensions: 45782
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 8
length of query: 105
length of database: 12,070,560
effective HSP length: 71
effective length of query: 34
effective length of database: 10,014,968
effective search space: 340508912
effective search space used: 340508912
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 52 (25.0 bits)