Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000574-TA|BGIBMGA000574-PA|IPR002110|Ankyrin
         (218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    40   4e-04
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    29   0.40 
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc...    28   0.93 
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   6.5  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    25   8.6  

>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
          role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 35 KCDYVIFHVVPDTCRRRWKQNGGYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKP 94
          K D V+ H+          +NG YTP+H A+ + H  + ++LVE    D NIRD  G  P
Sbjct: 16 KTDVVLKHLDSGISPNAADENG-YTPIHAAVSYGHSDLLKILVE-RGGDINIRDQDGETP 73


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 57  GYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKP 94
           GYTPLH A  + H+ +   L+    A P++   SG+KP
Sbjct: 895 GYTPLHYASLYDHKDICVNLLS-NGAKPDVIGASGKKP 931


>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
           kinase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 340

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 130 TEAFSNFLGVGATRSSAYMPK 150
           T  FSN LG GATR SA +P+
Sbjct: 47  TVHFSNHLGYGATRGSACIPE 67


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 1   MHWACKRGDENLVKLL 16
           +HWAC  G   ++KLL
Sbjct: 252 LHWACSMGHIEMIKLL 267


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 3   WACKRGDENLVKLL 16
           WA K G ENL+KLL
Sbjct: 258 WASKEGAENLLKLL 271


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 931,817
Number of Sequences: 5004
Number of extensions: 34755
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 5
length of query: 218
length of database: 2,362,478
effective HSP length: 70
effective length of query: 148
effective length of database: 2,012,198
effective search space: 297805304
effective search space used: 297805304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)