Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000574-TA|BGIBMGA000574-PA|IPR002110|Ankyrin
(218 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1) iden... 35 0.037
At3g54070.1 68416.m05978 ankyrin repeat family protein contains ... 33 0.15
At3g04710.1 68416.m00505 ankyrin repeat family protein contains ... 33 0.20
At5g66055.1 68418.m08321 ankyrin repeat protein / AKRP (AKR) ide... 32 0.35
At4g32500.1 68417.m04626 potassium channel protein, putative sim... 32 0.35
At2g25600.1 68415.m03066 potassium channel protein, putative sim... 31 0.46
At5g54610.1 68418.m06800 ankyrin repeat family protein contains ... 30 1.1
At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein ... 30 1.1
At5g40160.1 68418.m04874 ankyrin repeat family protein (EMB506) ... 30 1.4
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 30 1.4
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 29 1.9
At4g10620.1 68417.m01736 expressed protein 29 2.4
At5g15500.2 68418.m01815 ankyrin repeat family protein contains ... 29 3.2
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 3.2
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 3.2
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC... 28 5.7
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden... 27 9.9
At2g14250.1 68415.m01592 ankyrin repeat family protein contains ... 27 9.9
>At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1)
identical to AKT1 [Arabidopsis thaliana]
gi|563112|gb|AAA96810; member of the 1 pore, 6
transmembrane (1P/6TM- Shaker-type) K+ channel family,
PMID:11500563
Length = 857
Score = 35.1 bits (77), Expect = 0.037
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 55 NGGYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKP 94
N G TPLHIA + LL+E Y ADPN RD G P
Sbjct: 549 NNGRTPLHIAASKGTLNCVLLLLE-YHADPNCRDAEGSVP 587
>At3g54070.1 68416.m05978 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 574
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 55 NGGYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKPRQYLVHMDTSLSP 107
N T H+A +RHE+++ L+ E+ I + ++ + L+H+ L P
Sbjct: 287 NNNRTLFHVAALYRHENIFSLIYELGGIKDLIASYKEKQSKDTLLHLVARLPP 339
>At3g04710.1 68416.m00505 ankyrin repeat family protein contains
Pfam profile: PF00023 ankyrin repeat
Length = 456
Score = 32.7 bits (71), Expect = 0.20
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 56 GGYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKPRQYLVHMD 102
GG TPLHIA + + L++ ADPN +D G +P + D
Sbjct: 218 GGATPLHIAADIGNLELINCLLKA-GADPNQKDEEGNRPLEVAAARD 263
>At5g66055.1 68418.m08321 ankyrin repeat protein / AKRP (AKR)
identical to ankyrin repeat protein (AKRP) [Arabidopsis
thaliana] SWISS-PROT:Q05753
Length = 435
Score = 31.9 bits (69), Expect = 0.35
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 57 GYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKP 94
G+TPLH+A+Q R + +LL+ + AD +++ G P
Sbjct: 359 GWTPLHVAVQARRSDIVKLLL-IKGADIEVKNKDGLTP 395
>At4g32500.1 68417.m04626 potassium channel protein, putative
similar to potassium channel [Solanum tuberosum]
gi|1514649|emb|CAA60016; similar to AKT1 [Arabidopsis
thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6
transmembrane (1P/6TM- Shaker-type) K+ channel family,
PMID:11500563
Length = 880
Score = 31.9 bits (69), Expect = 0.35
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 57 GYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKP 94
G T LHIA ++ LL+E + ADPNIRD G P
Sbjct: 575 GRTALHIAASKGSQYCVVLLLE-HGADPNIRDSEGSVP 611
>At2g25600.1 68415.m03066 potassium channel protein, putative
similar to potassium channel [Lycopersicon esculentum]
GI:8980432; member of the 1 pore, 6 transmembrane
(1P/6TM- Shaker-type) K+ channel family, PMID:11500563;
Shaker Pollen Inward K+ Channel (SPIK) PMID:11825875
Length = 888
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 57 GYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKP 94
G T LHIA + LL+E + ADPNIRD G P
Sbjct: 577 GRTALHIAASKGSHYCVVLLLE-HGADPNIRDSEGNVP 613
>At5g54610.1 68418.m06800 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 426
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 53 KQNGGYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKPRQYLVHMDTSLSPGSYRK 112
+ GG T LH+A ++ V + LV+ D NI++ SG + +D + GS+
Sbjct: 179 RDRGGNTVLHLAAYENNDKVVKQLVKCLSLDRNIQNKSG------MTALDVLRARGSHMN 232
Query: 113 KE 114
KE
Sbjct: 233 KE 234
>At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein /
ankyrin repeat family protein similar to patsas protein
[Drosophila melanogaster] GI:6002770; contains Pfam
profiles PF00023: Ankyrin repeat, PF01529: DHHC zinc
finger domain
Length = 592
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 57 GYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKPRQYLVH 100
GY H+A Q+ +V ++ADP++ D GR P + +
Sbjct: 131 GYQATHVAAQYGQTAFLCHVVSKWNADPDVPDNDGRSPLHWAAY 174
>At5g40160.1 68418.m04874 ankyrin repeat family protein (EMB506)
identical to ankyrin repeat protein EMB506 [Arabidopsis
thaliana] GI:5911312; contains ankyrin repeats,
Pfam:PF00023
Length = 315
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 55 NGGYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGR 92
N G+TPLHIA+Q R+ + ++L+ AD R G+
Sbjct: 249 NEGWTPLHIAVQSRNRDITKILL-TNGADKTRRTKDGK 285
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 57 GYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKPRQYLV 99
G + LH+A + LL++ + AD NIRD+ GR P + +
Sbjct: 683 GCSLLHVACHIGDSVLLELLLQ-FGADLNIRDYHGRTPLHHCI 724
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 57 GYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKPRQYLV 99
G + LH+A Q + LL++ + AD N+RD+ GR P + +
Sbjct: 684 GCSLLHVACQSGDPILLELLLQ-FGADINMRDYHGRTPLHHCI 725
>At4g10620.1 68417.m01736 expressed protein
Length = 597
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 93 KPRQYLVHMDTSLSPGSYRKKEGF-LRIGSL 122
+ Q LVH+ L P +YR KEG+ + IG L
Sbjct: 387 REEQRLVHISKELKPRTYRIKEGYTVHIGGL 417
>At5g15500.2 68418.m01815 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 457
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 57 GYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGR 92
G TPLH+A++ H H + L++EV DP++ GR
Sbjct: 72 GLTPLHLAVE--HGHFW-LVLEVVKVDPSLVRIKGR 104
>At3g03790.2 68416.m00389 ankyrin repeat family protein /
regulator of chromosome condensation (RCC1) family
protein similar to hect domain and RLD 2 GB:NP_004658
[Homo sapiens]; contains Pfam PF00415: Regulator of
chromosome condensation (RCC1); contains Pfam PF00023:
Ankyrin repeat; similar to rjs (GI:3414809) [Mus
musculus]; similar to HERC2 (GI:4079809) [Homo
sapiens]
Length = 1081
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 57 GYTPLHIAMQFRHEHVYRLLVEVYDADPNIRD 88
G TPLHIA+ H + R L+ ADP+ RD
Sbjct: 62 GLTPLHIAVWRNHIPIVRRLLAA-GADPDARD 92
>At3g03790.1 68416.m00388 ankyrin repeat family protein /
regulator of chromosome condensation (RCC1) family
protein similar to hect domain and RLD 2 GB:NP_004658
[Homo sapiens]; contains Pfam PF00415: Regulator of
chromosome condensation (RCC1); contains Pfam PF00023:
Ankyrin repeat; similar to rjs (GI:3414809) [Mus
musculus]; similar to HERC2 (GI:4079809) [Homo
sapiens]
Length = 1078
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 57 GYTPLHIAMQFRHEHVYRLLVEVYDADPNIRD 88
G TPLHIA+ H + R L+ ADP+ RD
Sbjct: 62 GLTPLHIAVWRNHIPIVRRLLAA-GADPDARD 92
>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
putative similar to acyl-CoA binding protein 2
[Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 338
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 53 KQNGGYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKP 94
K N G T LH A+ E + LV+ AD I+D G P
Sbjct: 280 KDNEGQTSLHYAVVCEREALAEFLVK-QKADTTIKDEDGNSP 320
>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
identical to acyl-CoA binding protein 2 [Arabidopsis
thaliana] gi|12039034|gb|AAG46057
Length = 354
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 53 KQNGGYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKP 94
K N G TPLH A+ E + LV+ +A+ +D G P
Sbjct: 295 KDNEGQTPLHYAVVCDREAIAEFLVK-QNANTAAKDEDGNSP 335
>At2g14250.1 68415.m01592 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 241
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 57 GYTPLHIAMQFRHEHVYRLLVEVYDADPNIRDWSGRKPRQYLVH 100
G+ +H+A Q+ ++ Y AD N D GR P + +
Sbjct: 124 GFRAVHVASQYGQTAFVNHIIVDYAADYNALDIEGRSPLHWAAY 167
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.135 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,898,013
Number of Sequences: 28952
Number of extensions: 181569
Number of successful extensions: 399
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 24
length of query: 218
length of database: 12,070,560
effective HSP length: 78
effective length of query: 140
effective length of database: 9,812,304
effective search space: 1373722560
effective search space used: 1373722560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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