Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000573-TA|BGIBMGA000573-PA|undefined
(263 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.69
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 1.2
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 28 1.6
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 27 2.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 2.8
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 27 3.7
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 27 3.7
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 25 8.5
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 25 8.5
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.69
Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 12/122 (9%)
Query: 129 IQDTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKN----------LEKLSSPQTQSH 178
+++ + + + T+ +A+++SEDV K ++ E+N E + P +
Sbjct: 42 VEEKEASQVQSTKSKIATSESEDVTLKNIAKKNKRERNDKLIPQQSNESEAIEKPVQSTT 101
Query: 179 RTSIPNNESVXXXXXXXXXXXXXXXXXMLVDNEHKISVKERKQMFNRMASESDVLKSNKI 238
+ NE + +H + K RK + +S VLK NK+
Sbjct: 102 EVELKTNE-LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLD-SSSAQKVLKKNKL 159
Query: 239 GT 240
T
Sbjct: 160 NT 161
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 23 VTNHELVKHFKVFL-----MNPEMRDEARSTFKKNVNALAIIKTQNNEKWLILKKKY 74
V HEL++ K ++ +NP+ E TF K NA + KT+ N K L L ++
Sbjct: 1096 VIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQVSKTKKNLKVLPLYNRF 1152
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 135 NPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSS 172
+P+SE+ + ++S++ + RR SS+KN+ SS
Sbjct: 40 HPLSESLNKKSKSESDEDDIPIRKRRASSKKNMSNSSS 77
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 135 NPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSHRTSIPNNESV 188
NP +T S+ S P H R + + E S+P S N++SV
Sbjct: 632 NPALDTSSSVNSTSEATSPNTHHENLRDTSQKRESHSTPHDYEPHVSDKNDKSV 685
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 135 NPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSHRTS 181
N I ET+E AS + ED+ +V S + LE+ S TS
Sbjct: 470 NSIRETEEYAASPKLEDIADEVETDATSQRELLERQIQKAESSEDTS 516
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 11 EILKFMLAHNGKVTNHELVKHFKVFLMNPEMRDEARSTFKKNVNAL 56
+++ +L K E FK+F+ NPE +E ++N + L
Sbjct: 253 KLMMILLRDKSKNIQFEAFHVFKLFVANPEKSEEVIEILRRNKSKL 298
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 139 ETQESLASAQSEDVPPKV-HPRRRSSEKNLEKLSSPQTQSH 178
ET++SL S +VPP V P + + E N LSS Q H
Sbjct: 203 ETKKSLQVPPSRNVPPPVTRPNQYNPEPNF-SLSSGYPQQH 242
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 4.8
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 12/134 (8%)
Query: 41 MRDEARSTFKKNVNALAIIKTQNNEKWLILKKKYMPNNGKDMEEVSETKAESPHVGSLDT 100
+RD + K + ++ N+E L K +D SE K + + ++
Sbjct: 41 LRDRLHKSLKNFDSVKRKVEIANDEGNNKLLKSSPKAQTRDENTPSEFK--NGGFSNRES 98
Query: 101 QLESDXXXXXXXXXXVQLNQDFSLLTNLIQDTQCNPISETQESLASAQSEDVPPKVHPRR 160
E+ + +N+DF+ L N S+T+ ED+ P V+ +
Sbjct: 99 MSENCFSKSSTNLPRLDINRDFNSLLN----------SQTKPEATGLMKEDITPVVNTSK 148
Query: 161 RSSEKNLEKLSSPQ 174
+SS E+ S P+
Sbjct: 149 QSSTGTQEESSKPE 162
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 135 NPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSHRTSIPNNE 186
NP E+ S A+A E +P + +S +++EK S P + ++ P+N+
Sbjct: 115 NPEGESG-SCAAATREHIPYIISTASATSFEDIEKASGPGERWYQLYWPSND 165
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 43 DEARSTFKKNVNALAIIKTQNNEKWLILKKKYMPNNGKDMEEVSETKAESPHVGSLDTQL 102
DE+ S++ N + + I + N + + PN+ E S++K + HV ++
Sbjct: 51 DESTSSYSGNHHNINI-QHHPNRPFRTNSSSFSPNDYSISESPSKSKKDGVHVSAVQLDN 109
Query: 103 ESD 105
E+D
Sbjct: 110 ETD 112
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.125 0.341
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,051,561
Number of Sequences: 5004
Number of extensions: 37989
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 11
length of query: 263
length of database: 2,362,478
effective HSP length: 71
effective length of query: 192
effective length of database: 2,007,194
effective search space: 385381248
effective search space used: 385381248
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -