Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000573-TA|BGIBMGA000573-PA|undefined
         (263 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02410.1 68417.m00326 lectin protein kinase family protein co...    32   0.34 
At5g63340.1 68418.m07950 expressed protein                             32   0.45 
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing...    30   1.8  
At4g24170.1 68417.m03468 kinesin motor family protein contains P...    29   3.2  
At4g00450.1 68417.m00062 expressed protein                             29   3.2  
At2g36990.1 68415.m04537 RNA polymerase sigma subunit SigF (sigF...    29   4.2  
At5g53930.1 68418.m06710 expressed protein                             28   5.6  
At4g03970.1 68417.m00561 Ulp1 protease family protein contains P...    28   5.6  
At1g19680.1 68414.m02453 expressed protein                             28   5.6  
At5g58320.2 68418.m07301 kinase interacting protein-related low ...    28   7.3  
At5g58320.1 68418.m07300 kinase interacting protein-related low ...    28   7.3  
At4g25090.1 68417.m03604 respiratory burst oxidase, putative / N...    28   7.3  
At4g28590.1 68417.m04089 expressed protein                             27   9.7  
At3g09710.1 68416.m01150 calmodulin-binding family protein low s...    27   9.7  

>At4g02410.1 68417.m00326 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain and PF00138: Legume
           lectins alpha domain
          Length = 674

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 15  FMLAHNGKVTNHELVKHFKVFLMNPEMRDEARSTFKKNVNALAIIKTQNNEKW 67
           F   +NG  TNH L   F   +MNPE  D   +    N+N+L  +K+     W
Sbjct: 129 FSSTNNGNDTNHILAVEFDT-IMNPEFDDTNDNHVGININSLTSVKSSLVGYW 180


>At5g63340.1 68418.m07950 expressed protein
          Length = 172

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 131 DTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSHRTS 181
           D Q NP+  + E     +S   P K  P+R+ ++K +E L  P T+S + S
Sbjct: 40  DYQINPMMNSYELHVKIKSNS-PKKYLPQRQLAKKLIETLEKPSTESKKRS 89


>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
           protein
          Length = 776

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 50  KKNVNALAIIKTQNNEKWLILKKKYMPNNGKDMEEVSETKAE 91
           K + + LA +   ++E W  LK+KY+  NGK +E+    K E
Sbjct: 562 KGSTDTLASVSKPSSEDWFTLKEKYI--NGKYLEKALVVKDE 601


>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1004

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 6/137 (4%)

Query: 42  RDEARSTFKKNVNALAIIKTQNNEKWLILKKKYMPNNGKDMEEVSETKAESPHVGSLDTQ 101
           +D+A S+ K     L++      E  + +KK  +  + ++ E+  E + +SP    ++  
Sbjct: 528 KDDADSSIKNIDMELSLYTKPEAEDGVSVKK--LIEDVQETEQSVEKQKQSPKKEEMEQY 585

Query: 102 LESDXXXXXXXXX--XVQLNQDFSLLTNL-IQDT-QCNPISETQESLASAQSEDVPPKVH 157
           L  D             Q  Q++     L  QD    N + E+Q++  S + ED    + 
Sbjct: 586 LSRDMSEQVTKSLPEEEQCVQEYGAYDKLEAQDVLTINKLEESQQTEQSVEKEDTKKNLS 645

Query: 158 PRRRSSEKNLEKLSSPQ 174
            ++   ++NL    S Q
Sbjct: 646 SKKEDLKQNLSMDQSEQ 662


>At4g00450.1 68417.m00062 expressed protein
          Length = 2124

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 124 LLTNLIQDTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSHRTSIP 183
           L+  LI+    NPI+  ++ + S   + + P V P RR     + K   P    H T + 
Sbjct: 595 LVFELIRSGIFNPIAYVRQLIVSGMIDVIQPAVDPERRMRHHRILK-QLPGCFVHET-LE 652

Query: 184 NNESVXXXXXXXXXXXXXXXXXMLVDNEHKISVKERKQMFNRMASESDVLKSNKIGTSFS 243
             +                   +L+    ++ V++ K   N + S+    KS KI TS S
Sbjct: 653 EAQLFGGDKLSEAVRTYSNERRLLL---RELLVEKGKYWNNLVLSDQ---KSKKISTSLS 706

Query: 244 TMVSSKFCS 252
           +++  + C+
Sbjct: 707 SVIFPRACN 715


>At2g36990.1 68415.m04537 RNA polymerase sigma subunit SigF (sigF) /
           sigma-like factor (SIG6) identical to RNA polymerase
           sigma subunit SigF [Arabidopsis thaliana] GI:7209640;
           contains Pfam profiles PF04545: Sigma-70, region 4,
           PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2;
           identical to cDNA partial mRNA for putative sigma-like
           transcription factor (sig6 gene) GI:6273429
          Length = 547

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 128 LIQDTQCNPISETQESLASAQSEDVPPK--VHPRRRSSEKNLEKLSSPQT 175
           L+ DT+ NP    ++SL+++ S  +P K  +   +R  E+  +   +P++
Sbjct: 157 LVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKS 206


>At5g53930.1 68418.m06710 expressed protein
          Length = 529

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 26/137 (18%), Positives = 52/137 (37%)

Query: 51  KNVNALAIIKTQNNEKWLILKKKYMPNNGKDMEEVSETKAESPHVGSLDTQLESDXXXXX 110
           K+ ++  IIK  +N+   + KKK   N  K +  + +    S    SL +  E D     
Sbjct: 3   KSSSSSKIIKDSSNKLRSVKKKKSKRNKSKKIRRIKDESESSGSDSSLYSSSEDDYRRKK 62

Query: 111 XXXXXVQLNQDFSLLTNLIQDTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKL 170
                +   +     ++   D   +     ++   S + ++   K   +  S ++    L
Sbjct: 63  KRRSKLSKKRSRKRYSSSESDDDSDDDRLLKKKKRSKRKDENVGKKKKKVVSRKRRKRDL 122

Query: 171 SSPQTQSHRTSIPNNES 187
           SS  T S ++    +ES
Sbjct: 123 SSSSTSSEQSDNDGSES 139


>At4g03970.1 68417.m00561 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to  At5g28170, At1g35110,
           At1g44880, At3g42530, At4g19320, At5g36020, At3g43010,
           At2g10350
          Length = 1043

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 77  NNGKDMEEVSETKAESPHVGSLDTQLESDXXXXXXXXXXVQLNQD-FSLLTNLIQ---DT 132
           N G  + + ++ K ++ +   +D+Q++ D          + LNQD  S     I    D 
Sbjct: 480 NEGNPVYD-TDVKDQNANEEDVDSQMQVDPSSNPSVEKLLPLNQDHISDRVPAIPSGLDL 538

Query: 133 QCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSH 178
                S+ QES A+ +  D   KV PR   S+ ++EKL  P  Q H
Sbjct: 539 SKEHSSKEQESNANEEDVDSQMKVDPR---SDPSVEKL-LPLNQDH 580


>At1g19680.1 68414.m02453 expressed protein
          Length = 444

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 126 TNLIQDTQCNPISETQES-LASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSHRTSI-- 182
           ++++     NP S T  S L SA +  +PP+  P RR+     ++L    + S    +  
Sbjct: 129 SDIVSSVLPNPSSSTSVSDLPSAHTHSLPPRSTPSRRARGSPGQQLFRQVSDSQTLGLKS 188

Query: 183 PNNES 187
           PNN S
Sbjct: 189 PNNYS 193


>At5g58320.2 68418.m07301 kinase interacting protein-related low
           similarity to kinase interacting protein 1 [Petunia
           integrifolia] GI:13936326
          Length = 558

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 99  DTQLESDXXXXXXXXXXVQLNQDFSLLTNLIQDTQCNPISETQESLASAQSEDVPPKVHP 158
           D++LESD          V +  DF  L+  I D +   + E +E L   Q E     + P
Sbjct: 174 DSELESDDSSVTNYPGYVSIGSDFQSLSKRIMDLEIE-LREAKERL-RMQLEGNTESLLP 231

Query: 159 RRRSSEK 165
           R +S  K
Sbjct: 232 RVKSETK 238


>At5g58320.1 68418.m07300 kinase interacting protein-related low
           similarity to kinase interacting protein 1 [Petunia
           integrifolia] GI:13936326
          Length = 490

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 99  DTQLESDXXXXXXXXXXVQLNQDFSLLTNLIQDTQCNPISETQESLASAQSEDVPPKVHP 158
           D++LESD          V +  DF  L+  I D +   + E +E L   Q E     + P
Sbjct: 174 DSELESDDSSVTNYPGYVSIGSDFQSLSKRIMDLEIE-LREAKERL-RMQLEGNTESLLP 231

Query: 159 RRRSSEK 165
           R +S  K
Sbjct: 232 RVKSETK 238


>At4g25090.1 68417.m03604 respiratory burst oxidase, putative /
           NADPH oxidase, putative similar to respiratory burst
           oxidase protein A from Arabidopsis thaliana, gb:AF055353
           [gi:3242781], protein D [gi:3242789]; contains Pfam
           profile PF01794 Ferric reductase like transmembrane
           component
          Length = 849

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 43  DEARSTFKKNVNALAII-KTQNNEKWLILKKKYM 75
           D ++ST  + +  L II KT  N  W +++K+Y+
Sbjct: 82  DRSKSTAGQALKGLKIISKTDGNAAWTVVEKRYL 115


>At4g28590.1 68417.m04089 expressed protein 
          Length = 331

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 36 LMNPEMRDEARSTFKKNVNALAIIKTQNNEKW 67
          +++PE +++ RS  K       I +T+NNEK+
Sbjct: 55 VLDPESKNQTRSRRKNKEAVTPIAETENNEKF 86


>At3g09710.1 68416.m01150 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 454

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 126 TNLIQDTQC---NPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSHRTSI 182
           +NLI  T+     P S+T   +A   S      + P +  ++K L   +SP  +  R+S 
Sbjct: 380 SNLIPTTKSARGKPKSQTSSRVAVTTSTTEESSILPEKAPAKKRLSTSASPAPKPRRSSA 439

Query: 183 P 183
           P
Sbjct: 440 P 440


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.125    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,206,294
Number of Sequences: 28952
Number of extensions: 181391
Number of successful extensions: 535
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 16
length of query: 263
length of database: 12,070,560
effective HSP length: 80
effective length of query: 183
effective length of database: 9,754,400
effective search space: 1785055200
effective search space used: 1785055200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)