Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000573-TA|BGIBMGA000573-PA|undefined
(263 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 29 2.9
06_03_1196 + 28316186-28316290,28317529-28317633,28317725-283177... 29 5.0
10_07_0097 - 12837998-12838336,12839201-12839317,12839737-128398... 28 6.7
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 28 8.8
10_07_0194 - 13957709-13957925,13960065-13960129,13960281-139604... 28 8.8
06_03_1388 - 29822789-29823307 28 8.8
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 28 8.8
>01_06_0556 +
30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 12 ILKFMLAHNGKVTNHELVKHFKVFLMNPEMRDEARSTFKKNVNALAIIKTQNNEKWLILK 71
+ KF H GK L K V ++ A K++V+ L ++KT +++WL++K
Sbjct: 504 VAKFKKFHMGK----SLKKQLSVPFNKGKIHKSALVFSKQSVSTLELLKTSCSKEWLLMK 559
Query: 72 K 72
+
Sbjct: 560 R 560
>06_03_1196 +
28316186-28316290,28317529-28317633,28317725-28317796,
28318023-28318259,28318608-28318718,28318810-28318923,
28319272-28319373,28320238-28320306,28320447-28320553,
28321128-28321224,28321347-28321466,28321663-28321847,
28322065-28322353
Length = 570
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 63 NNEKWLILKKKYMPNNGKDMEEVSETKAESPHVGSLDTQLESD 105
N E W ++K Y N +E+ + A +VGSLD +E D
Sbjct: 480 NFEYWSMVKTTYNNYNSDVDDELVDLDAPEMNVGSLDDHVEID 522
>10_07_0097 -
12837998-12838336,12839201-12839317,12839737-12839868,
12840656-12840907
Length = 279
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 116 VQLNQDFSLLTNLIQDTQCNPISETQESLASAQSEDVPPKVHPRRRSSE 164
++L +D + +Q P++ T + A+AQ V PK P+++ E
Sbjct: 210 MELPRDMVDIEKELQKNGIKPMTNTAKRRAAAQINGVQPKAKPKKKQRE 258
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 27.9 bits (59), Expect = 8.8
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 83 EEVSETKAESPHVGSLDTQLESDXXXXXXXXXXVQLNQDFSLLTNLIQDTQCNPISETQE 142
+E+S AES S+ Q+ S+ +Q+ +D L N +DT +++ E
Sbjct: 205 QEISRLLAES---NSMKQQILSESERANKAENEIQVLKDTILKLNSDKDTSLLQYNQSTE 261
Query: 143 SLASAQSEDVPPKVHPRRRSSE--KNLEKLSSPQTQS 177
L++ +SE + ++ + E ++KLSS + ++
Sbjct: 262 RLSTLESELSKAQDDLKKLTDEMATEVQKLSSAEARN 298
>10_07_0194 -
13957709-13957925,13960065-13960129,13960281-13960454,
13960847-13960889,13961081-13961225,13961305-13961413,
13961694-13961822,13961935-13962031,13962639-13962703,
13963275-13963439
Length = 402
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 40 EMRDEARSTFKKNVNALAIIKTQNNEKW 67
+M EA S KK+V ALA+ KT ++ W
Sbjct: 312 KMVSEATSAKKKDVYALALSKTAESQAW 339
>06_03_1388 - 29822789-29823307
Length = 172
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 132 TQCNPISETQESLASAQSEDVPPKVHPRRRSS 163
T P S T+ A+A + VPP VH + R S
Sbjct: 49 TTARPSSRTRARAAAASAPPVPPVVHQQHRLS 80
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 27.9 bits (59), Expect = 8.8
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 83 EEVSETKAESPHVGSLDTQLESDXXXXXXXXXXVQLNQDFSLLTNLIQDTQCNPISETQE 142
+E+S AES S+ Q+ S+ +Q+ +D L N +DT +++ E
Sbjct: 426 QEISRLLAES---NSMKQQILSESERANKAENEIQVLKDTVLKLNSDKDTSLLQYNQSTE 482
Query: 143 SLASAQSEDVPPKVHPRRRSSE--KNLEKLSSPQTQS 177
L++ +SE + ++ + E ++KLSS + ++
Sbjct: 483 RLSTLESELSKAQDDLKKLTDEMATEVQKLSSAEARN 519
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.125 0.341
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,815,355
Number of Sequences: 37544
Number of extensions: 184469
Number of successful extensions: 469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 7
length of query: 263
length of database: 14,793,348
effective HSP length: 81
effective length of query: 182
effective length of database: 11,752,284
effective search space: 2138915688
effective search space used: 2138915688
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)
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