Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000573-TA|BGIBMGA000573-PA|undefined
(263 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29691| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_24998| Best HMM Match : Extensin_2 (HMM E-Value=1) 30 2.2
SB_29855| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_16654| Best HMM Match : Granin (HMM E-Value=4.6) 29 5.1
SB_53317| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 28 9.0
>SB_29691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 1 MSAPTELSFDEILKFMLAHNGKVTNHELVKHFKVFLMNP 39
MSA L+ + +F+L + +V NH+L+ HF+ L +P
Sbjct: 2 MSANEPLTLALVREFILKNGSRVRNHDLITHFRTQLNDP 40
>SB_24998| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 335
Score = 29.9 bits (64), Expect = 2.2
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 75 MPNNGKDMEEVSETKAESPHVGSL-DTQL----ESDXXXXXXXXXXVQLNQDFSLLTNLI 129
+P++ + +E+ S+ + H+ S+ D+Q ESD V +Q +L
Sbjct: 167 VPDSQQALEKESDPDTQERHLQSVPDSQQALGKESDPDTQERHLQSVPDSQQ-ALEKESD 225
Query: 130 QDTQ---CNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQS-HRTSIPNN 185
DTQ + ++Q++L D + S++ LEK S P TQ R S+P++
Sbjct: 226 PDTQERHLQSVPDSQQALGKESDPDTQERPLQSVPDSQQALEKESDPDTQDIPRQSVPDS 285
Query: 186 ESV 188
+ V
Sbjct: 286 QQV 288
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 131 DTQCNPISETQESLASAQSEDVPPKVHPRRRS---SEKNLEKLSSPQTQS-HRTSIPNNE 186
DTQ P+ +S + E P +S S++ LEK S P TQ H S+P+++
Sbjct: 112 DTQERPLQSVPDSQQALGKESDPDTQERHLQSVPDSQQALEKESDPDTQERHLQSVPDSQ 171
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 130 QDTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQS-HRTSIPNNE 186
Q+ + ++Q++L D + S++ LEK S P TQ H S+P+++
Sbjct: 137 QERHLQSVPDSQQALEKESDPDTQERHLQSVPDSQQALEKESDPDTQERHLQSVPDSQ 194
>SB_29855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 131 DTQCNPISETQESLASAQSEDVPPKVHPRRRS---SEKNLEKLSSPQTQS-HRTSIPNNE 186
DTQ P+ +S + E P +S S++ LEK S P TQ H S+P+++
Sbjct: 112 DTQERPLQSVPDSQQALGKESDPDTQERHLQSVPDSQQALEKESDPDTQERHLQSVPDSQ 171
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 130 QDTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQS-HRTSIPNNE 186
Q+ + ++Q++L D + S++ LEK S P TQ H S+P+++
Sbjct: 183 QERHLQSVPDSQQALGKESDPDTQERHLQSVPDSQQALEKESDPDTQERHLQSVPDSQ 240
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 130 QDTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQS-HRTSIPNNE 186
Q+ + ++Q++L D + S++ LEK S P TQ H S+P+++
Sbjct: 137 QERHLQSVPDSQQALEKESDPDTQERHLQSVPDSQQALEKESDPDTQERHLQSVPDSQ 194
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 129 IQDTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSHRTSIPNNES 187
I +++ + + Q S+A + V K PR+ S E +KL S IP ES
Sbjct: 2261 IVESRMAELDDIQRSMAEDEEAFVERKYTPRKSSFEDGQDKLRDNVQYSSSVRIPKRES 2319
>SB_16654| Best HMM Match : Granin (HMM E-Value=4.6)
Length = 728
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 132 TQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSHRTSIPNNE 186
++C SET + S+ K HPR R S+ +L + T S RT+I +N+
Sbjct: 591 SECVTQSETFDGYIGQPSDVKSSKNHPRTRDSQADLHLAN--HTLSSRTAILSNQ 643
>SB_53317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 42 RDEARSTFKKNVNALAIIKTQNNE-KWLILKKKYMPNNGKDMEEVSETKAESPHV 95
RD+AR++ K V A ++K ++ + W++ ++G ++ + ++P++
Sbjct: 183 RDKARASSKSTVLAECVVKLKSRDTAWVVQLSSGSDDSGSQTPYITRKRGQTPYI 237
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 133 QCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQ 176
Q P+SE Q Q + P+ H R + NL KL S Q
Sbjct: 1422 QKRPLSEMQPPTREQQQNKMRPQSHQRNSRNSINLSKLRSSPHQ 1465
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.125 0.341
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,216,296
Number of Sequences: 59808
Number of extensions: 239171
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 12
length of query: 263
length of database: 16,821,457
effective HSP length: 81
effective length of query: 182
effective length of database: 11,977,009
effective search space: 2179815638
effective search space used: 2179815638
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)
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