GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000573-TA|BGIBMGA000573-PA|undefined
         (263 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    30   1.9  
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    30   1.9  
Z83225-2|CAB05722.1|  732|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81097-19|CAB03177.1|  732|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    29   4.5  
U41547-5|AAX88831.1|  272|Caenorhabditis elegans C.elegans homeo...    29   4.5  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    29   4.5  
AL024499-8|CAL22708.1|  106|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st...    28   7.8  

>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
            exchange factorfor RAS protein.
          Length = 1413

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 129  IQDTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSHRTSIPN 184
            +  T  +P + T  +  S+     PPK+HPRR + +       SP T S   S P+
Sbjct: 1306 MMSTATSPTTLTTTTTPSSAGGP-PPKLHPRRMTQQPMSPLAKSPLTPSRDNSSPS 1360


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
            homolog protein 1 protein.
          Length = 1493

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 129  IQDTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSHRTSIPN 184
            +  T  +P + T  +  S+     PPK+HPRR + +       SP T S   S P+
Sbjct: 1306 MMSTATSPTTLTTTTTPSSAGGP-PPKLHPRRMTQQPMSPLAKSPLTPSRDNSSPS 1360


>Z83225-2|CAB05722.1|  732|Caenorhabditis elegans Hypothetical
           protein F42H11.2 protein.
          Length = 732

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 119 NQDFSLLTNLIQDTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSH 178
           N+D     + ++ T+    S T E++ + + +  P   H R +S E  L  + SP + ++
Sbjct: 247 NEDVKTRGSPVKKTRGTGRSRTPEAILNPRKQRTPVNHHKRSKSQETKLVAMPSPNSMAY 306


>Z81097-19|CAB03177.1|  732|Caenorhabditis elegans Hypothetical
           protein F42H11.2 protein.
          Length = 732

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 119 NQDFSLLTNLIQDTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSH 178
           N+D     + ++ T+    S T E++ + + +  P   H R +S E  L  + SP + ++
Sbjct: 247 NEDVKTRGSPVKKTRGTGRSRTPEAILNPRKQRTPVNHHKRSKSQETKLVAMPSPNSMAY 306


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 130 QDTQCNPISETQ--ESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQ 176
           Q+ Q  P   TQ  +S    QS  VPP+ HP+++  ++  E   SP  Q
Sbjct: 313 QNPQQQPQQTTQFGQSQIQLQSGPVPPQQHPQQQQPQQQPELERSPLDQ 361


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 66   KWLILKKKYMPNNGKDMEEVSETKAESPHVGSLDTQLESDXXXXXXXXXXVQLNQDFSLL 125
            K+  L  K+M  NG+ MEE    +AE       +   E+            ++N D S  
Sbjct: 1733 KFAALYSKFMSENGERMEEDEPVEAEEEEGVKQEPDDETQDSAEAPPVLSAEVNSDDS-- 1790

Query: 126  TNLIQDTQCNPI--SETQESLASAQSEDVPPKVHP 158
             N +  T       SET      A +ED  P   P
Sbjct: 1791 -NDVPSTSAAAAVSSETAADAEPASAEDQAPTDEP 1824


>U41547-5|AAX88831.1|  272|Caenorhabditis elegans C.elegans
          homeobox protein 60 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 26 HELVKHFKVFLMNPEMRDEARSTFKKNVNALAIIKTQNNEKWLILKKKYMPNNGKDMEE 84
          HE++   K  L    M+++ ++ F+     L  + T+ +E+W  L++KY+    +  E+
Sbjct: 9  HEVLLERKDILRKQRMKNQ-KAQFENPTFPLEEVNTEKDEEWQPLERKYLDGINRIKED 66


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 66   KWLILKKKYMPNNGKDMEEVSETKAESPHVGSLDTQLESDXXXXXXXXXXVQLNQDFSLL 125
            K+  L  K+M  NG+ MEE    +AE       +   E+            ++N D S  
Sbjct: 1733 KFAALYSKFMSENGERMEEDEPVEAEEEEGVKQEPDDETQDSAEAPPVLSAEVNSDDS-- 1790

Query: 126  TNLIQDTQCNPI--SETQESLASAQSEDVPPKVHP 158
             N +  T       SET      A +ED  P   P
Sbjct: 1791 -NDVPSTSAAAAVSSETAADAEPASAEDQAPTDEP 1824


>AL024499-8|CAL22708.1|  106|Caenorhabditis elegans Hypothetical
           protein H38K22.7 protein.
          Length = 106

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 122 FSLLTNLIQDTQCNPISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQSHRTS 181
           FSL T L+Q   C   SE ++  +  +++ V PK  P    S+K++E +  P +Q+  TS
Sbjct: 14  FSLATCLVQ---CEK-SERKKFRSDKKAKLVGPKTKP----SQKSVENVHCPVSQAPPTS 65

Query: 182 IPNNES 187
           +P   S
Sbjct: 66  MPIESS 71


>Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical
           protein F01G10.5 protein.
          Length = 824

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 137 ISETQESLASAQSEDVPPKVHPRRRSSEKNLEKLSSPQTQ 176
           ++ET+ES+AS +  D  P   P R +  +++  +  P+ Q
Sbjct: 710 LNETRESIASDEFFDRFPSTFPTRAAPRESVVSIGEPKNQ 749


>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 1 protein.
          Length = 1616

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 32  FKVFLMNPEMRD-EARSTFKKNVNALAIIKTQNNEKWLILKKKY 74
           +   L N E+++ E RS +  NVN   ++KT+   K L+L++ +
Sbjct: 241 YTYILENEELKESEVRSLYTVNVNGQEVMKTETRSK-LVLEENH 283


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.125    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,581,291
Number of Sequences: 27539
Number of extensions: 198095
Number of successful extensions: 668
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 11
length of query: 263
length of database: 12,573,161
effective HSP length: 80
effective length of query: 183
effective length of database: 10,370,041
effective search space: 1897717503
effective search space used: 1897717503
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)