GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000573-TA|BGIBMGA000573-PA|undefined
         (263 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 131 DTQCNPISETQESLASA-QSEDVPPKVHPRRRSSEKNL--------EKLSSPQTQSHRTS 181
           DT    + E Q  LA A Q       V P  R    N+        EKL++P +Q+  TS
Sbjct: 71  DTLDTFLRELQADLAEASQPTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPSSQASPTS 130

Query: 182 IP 183
           IP
Sbjct: 131 IP 132



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 127 NLIQDTQCNPISETQESLASAQS 149
           NL+   + NP S  Q SLAS  S
Sbjct: 266 NLLLKARLNPNSSLQPSLASHHS 288


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 44  EARSTFKKNVNALAIIKTQNNEKWLILKKKYMPNNGKDMEEVSETK 89
           + RS F  + N   I+K + +E   IL  K +PN G ++ EV   K
Sbjct: 360 KVRSMFNDSGNP--ILKAKPSEVVQILGWKELPNVGDEILEVENDK 403


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
          protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 56 LAIIKTQNNEKWLILKKKYMPNNG 79
          +A+   Q N +   +KK Y   NG
Sbjct: 2  MAVAAAQKNREMFAIKKSYSIENG 25


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.125    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,066
Number of Sequences: 429
Number of extensions: 2172
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 263
length of database: 140,377
effective HSP length: 57
effective length of query: 206
effective length of database: 115,924
effective search space: 23880344
effective search space used: 23880344
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)