Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000572-TA|BGIBMGA000572-PA|IPR000577|Carbohydrate
kinase, FGGY, IPR005999|Glycerol kinase
(431 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 27 3.8
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 27 3.8
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 27 5.1
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 27 6.7
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 27 6.7
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 6.7
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 27 6.7
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 6.7
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 6.7
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 27.5 bits (58), Expect = 3.8
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 315 LEAVCFQVRDILDAMNEDCGIPLQVLKVD---GGMTGNQLLMQMQADLVGIEVIKAGFSE 371
L A+ + + + E CG P +D GG++G L + D G+ VI A E
Sbjct: 468 LLALAVMITEKVVHWEEACGFPDVTHIIDFGPGGISGVGSLTRANKDGQGVRVIVADSFE 527
Query: 372 STALGAAMVAYWGVKTDIQGVPIPMTSGNTYAPKISDDERDMRYKQWKMAVERSLG 427
S +GA + D + + Y+PK+ ++ Y +++ R LG
Sbjct: 528 SLDMGAKFEIF---DRDAKSIEFAPNWVKLYSPKLVKNKLGRVYVDTRLS--RMLG 578
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 3.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 36 YHQKELEQHF--PQEGWVEQDPYAILAVVKTCIEKAVENLVALGGNPEDIIAVGVT 89
Y+ K L++ E +V A V K ++K + N+ NP DI A+G T
Sbjct: 182 YYPKSLQEALWAAVEHYVNNSGEAYSTVQKLAVQKKIGNIRMYLVNPRDIFALGST 237
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.1 bits (57), Expect = 5.1
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 236 SSSEVAVAGAALGWLKENIGLLDTAKESQTIAETATENGSV-VFVPAFSGL---YAPYWR 291
SS E AGA LG N+ + + A + I E GSV + A GL Y+ R
Sbjct: 434 SSEENTKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGLGLAYSGANR 493
Query: 292 QDARGVICGITEDTN 306
+D ++ I DT+
Sbjct: 494 EDLLDMLSPIVTDTD 508
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 49 GWVEQDPYAILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQGT 102
G E +P ++ ++K +EK NLV LG D A + W Q T
Sbjct: 94 GEKELEPLSVAKLLKATVEKEKSNLVLLGKQAIDDDAHQTGGMLAAMLGWPQFT 147
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 228 KSVLPDIKSSSEV-AVAGAALGWLKENIGLLDTAKESQTIAETATENGSVVFVPAFSG 284
+ ++PD + S ++ G LKEN L TAK+ I+ ++ + + P FSG
Sbjct: 137 RPIVPDQERSRKINPQKGNNNNLLKENKSLKTTAKDLSDISSSSMKKANNSSKPLFSG 194
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 226 VPKSVLPDIKSSSEVAVAGAALGWLKENIGLLDTAKESQTIAE 268
V K +LPD+ SSEV G +EN D ++++ ++E
Sbjct: 135 VYKHILPDLPQSSEVDRNSETEGTREENSNTSDWDEQNEYVSE 177
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 284 GLYAPYWRQDARGVICGITEDTNSNHIV 311
GL A +R D +G+ CG+ E H V
Sbjct: 178 GLTATLFRADGKGLACGLDEIVYHRHFV 205
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 103 GKPLYNAIVWLDMRTSSTIDKLLDTVPNETRNKNYLKPLCGL-PLS 147
G+PL ++ R S D L VP T N+ + LC + PL+
Sbjct: 251 GRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLN 296
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 132 TRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVD 163
T N +K + GLP+ P F K+R+ D +
Sbjct: 543 TNISNAMKAVNGLPIHPLFKKSKIRYAPDRCE 574
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,459
Number of Sequences: 5004
Number of extensions: 82795
Number of successful extensions: 215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 12
length of query: 431
length of database: 2,362,478
effective HSP length: 75
effective length of query: 356
effective length of database: 1,987,178
effective search space: 707435368
effective search space used: 707435368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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