Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000572-TA|BGIBMGA000572-PA|IPR000577|Carbohydrate
kinase, FGGY, IPR005999|Glycerol kinase
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 232 5e-61
12_02_1225 - 27164595-27164842,27164959-27165133,27165213-271653... 38 0.021
02_01_0580 + 4303020-4303211,4303838-4303879,4304538-4304646,430... 36 0.047
04_02_0010 + 8486571-8486848,8489354-8489456,8490139-8490303,849... 33 0.58
02_02_0392 - 9649858-9650405,9650499-9650670,9650788-9650926,965... 31 2.4
08_01_0431 + 3779519-3780393,3780402-3780768 30 4.1
06_03_0675 - 23428948-23431389 29 5.4
03_05_0309 + 22990117-22990286,22990371-22990557,22990763-229908... 29 5.4
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 29 7.2
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 29 9.5
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 29 9.5
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 232 bits (567), Expect = 5e-61
Identities = 114/239 (47%), Positives = 155/239 (64%), Gaps = 14/239 (5%)
Query: 11 VGAIDEGTSSARFIIFKANSSDVVAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKAV 70
V +ID+GT+S RFI++ ++ V A HQ E +QH+P+ GWVE DP I+ VK C+ KA+
Sbjct: 7 VASIDQGTTSTRFIVYDRHAKPV-ASHQLEFKQHYPEAGWVEHDPMEIMESVKICMAKAL 65
Query: 71 ENLVALGGNPE-DIIAVGVTNQRETTIVWEQGTGKPLYNAIVWLDMRTSSTIDKLLDTVP 129
+ A G N + + A+G+TNQRETT++W + TG PLYNAIVW+D RTS +L +
Sbjct: 66 DKAAADGHNMDVGLKAIGITNQRETTVMWSKSTGLPLYNAIVWMDARTSPICRRLESDLS 125
Query: 130 NETRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVDPVKNAMKKGTCRFGTVDCWIIWNLTG 189
+ + CGL +S YFSA+K+ WL +NVD VKNA++ G FGT+D W+IWNLTG
Sbjct: 126 G---GRTHFVETCGLAISTYFSALKVLWLIENVDAVKNAVRAGDALFGTIDTWLIWNLTG 182
Query: 190 GPNG---------GKHVTDVTNASRTMLMNIENLNWDPLLLRFFEVPKSVLPDIKSSSE 239
G G G HVTD +NASRTMLMN++ L+WD L +P +LP I S+SE
Sbjct: 183 GIGGTDRDGNKVFGHHVTDCSNASRTMLMNLKALDWDKPTLETLGIPAEILPKIISNSE 241
Score = 165 bits (402), Expect = 5e-41
Identities = 85/199 (42%), Positives = 124/199 (62%), Gaps = 15/199 (7%)
Query: 240 VAVAGAALGWLKENIGLLDTAKESQTIAETATENGSVVFVPAFSGLYAPYWRQDARGVIC 299
+A+AGAA+ WL++++G++ TA + + +A+T ++G + FVPAF+GL+AP+WR DARG+
Sbjct: 325 IAIAGAAVQWLRDSLGIISTAADIEKLADTVQDSGGIYFVPAFNGLFAPWWRDDARGICI 384
Query: 300 GITEDTNSNHIVKAALEAVCFQVRDILDAMNEDCGIPLQV--------LKVDGGMTGNQL 351
GIT TN HI +A LE++CFQV D+L +M++D G +V L+VDGG T N L
Sbjct: 385 GITRFTNKGHIARAVLESMCFQVNDVLSSMHKDAGEAGEVKSAEGEFLLRVDGGATVNNL 444
Query: 352 LMQMQADLVGIEVIKAGFSESTALGAA-----MVAYWGVKTDIQGVPIPMTSGNTYAPKI 406
LMQ+QADL+G V++ E+TALGAA V W + G+ T + PK+
Sbjct: 445 LMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGVWSKEQIFAGLHKENT--RVFRPKL 502
Query: 407 SDDERDMRYKQWKMAVERS 425
+ R R W AV RS
Sbjct: 503 DEAHRRKRADSWYKAVSRS 521
>12_02_1225 -
27164595-27164842,27164959-27165133,27165213-27165307,
27165391-27165444,27165794-27165868,27165961-27166081,
27166494-27166549,27166698-27166762,27166962-27167050,
27167155-27167812,27168182-27168202,27168777-27168859,
27169081-27169136,27169413-27169619,27170628-27170760
Length = 711
Score = 37.5 bits (83), Expect = 0.021
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 331 EDCGIPLQVLKV--DGGMTGNQLLMQMQADLVGIEVIKAGFSESTALGAAMVAYWGVKTD 388
E CG+P+ ++ GG + NQ++++ A + G V +S +LGAA+ A G +
Sbjct: 588 ERCGLPVPPKRIIATGGASSNQIILKTMASIFGCSVYTVQRPDSASLGAALRAAHGWICN 647
Query: 389 IQGVPIPMT 397
+G +P++
Sbjct: 648 QKGKFVPVS 656
>02_01_0580 +
4303020-4303211,4303838-4303879,4304538-4304646,
4304731-4304859,4305002-4305121,4305223-4305343,
4305888-4306044,4306377-4306427,4306573-4306695
Length = 347
Score = 36.3 bits (80), Expect = 0.047
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 256 LLDTAKESQTIAETATENGSVVFVPAFSGLYAPYWRQDARGVICGITEDTNSNHIV---K 312
+L + Q I+ ++ + +P F G +P ++G+ICG T DT+ H+
Sbjct: 208 ILFSMAHEQNISFISSLTQDIHVLPDFHGNRSPLADPKSKGIICGFTLDTSEKHLALLYL 267
Query: 313 AALEAVCFQVRDILDAMN 330
A ++ + + R I++ N
Sbjct: 268 ATIQGIAYGTRHIVEHCN 285
Score = 32.7 bits (71), Expect = 0.58
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 102 TGKPLYNAIVWLDMRTSSTIDKLLDTVPNETRNKNYLKPLCGLPLSPYFSAVKLRWLSDN 161
TG N IVW+D R +++ RN L+ CG +SP A KL W+ +N
Sbjct: 19 TGDARRNIIVWMDHRAVDQAERI------NARNSPVLQ-YCGGGVSPEMQAPKLLWVKEN 71
Query: 162 V 162
+
Sbjct: 72 L 72
>04_02_0010 +
8486571-8486848,8489354-8489456,8490139-8490303,
8490654-8490788
Length = 226
Score = 32.7 bits (71), Expect = 0.58
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 366 KAGFSESTALGAAMVAY-WGVKTDIQGVPIPMTSGNTYAPKISDDERDMRYKQWKMAVER 424
KAGF++S + A +++ +G + G P +G P ISD + Y +WK ++
Sbjct: 165 KAGFNDSKSDQATRISFKYGCARGVTGTPYFFVNG---IPLISDSGSPLEYNKWKSILDP 221
Query: 425 SLG 427
+G
Sbjct: 222 LVG 224
>02_02_0392 -
9649858-9650405,9650499-9650670,9650788-9650926,
9651113-9651334,9651422-9651495,9653042-9653661,
9653810-9653965,9655250-9655347,9655443-9655534,
9655891-9655977
Length = 735
Score = 30.7 bits (66), Expect = 2.4
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 57 AILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQG----TGKPLYNAIVW 112
A+LA V I V+ L G P +I R T+V+ G T + + N + W
Sbjct: 266 AVLAAVDDAINDGVDVLSLSLGGPNEIHGTLHAVARGITVVFAGGNDGPTSQTVQNTVPW 325
Query: 113 LDMRTSSTIDKLLDTVPNETRNKNYL 138
+ ++TID+ T + N+ L
Sbjct: 326 VITVAAATIDRTFPTTISLGNNEKLL 351
>08_01_0431 + 3779519-3780393,3780402-3780768
Length = 413
Score = 29.9 bits (64), Expect = 4.1
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 295 RGVICGITE-DTNSNHIVKA--ALEAVC-FQVRDILDAMNEDCGI---PLQVLKVDGGMT 347
R V+ G+T+ D S ++V+A + C F D D +++ G+ LQ+LKVDG
Sbjct: 264 REVMRGVTDLDNGSKYLVRARHVPKISCRFDYADGDDVEDDEAGLFTRQLQILKVDG--- 320
Query: 348 GNQLLMQMQADLVGIEVIKAGFSESTALGA 377
G Q L++ A + V+ G+ S A
Sbjct: 321 GEQKLVEASAASLEDHVLFLGYEFSACFPA 350
>06_03_0675 - 23428948-23431389
Length = 813
Score = 29.5 bits (63), Expect = 5.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 83 IIAVGVTNQRETTIVWEQGTGKPLY 107
I AV +N E T+VW G+P+Y
Sbjct: 61 IFAVWFSNSAEKTVVWSANLGRPVY 85
>03_05_0309 +
22990117-22990286,22990371-22990557,22990763-22990849,
22991101-22991346
Length = 229
Score = 29.5 bits (63), Expect = 5.4
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 98 WEQGTGKPLYNAIVWLDMRTSSTIDKLLDTVPNETRNKNYLKPLCGLPLSP 148
W Q + + +V+L M T +DKL+ ++ +++ + P LPL P
Sbjct: 103 WRQNPASSIASCVVFLVMFTKDIVDKLV--AADQEASRDGMPPFGNLPLRP 151
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 54 DPYAILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNA 109
D Y +L+ V+ I++ ++L ++ D+ AVG +Q + T W + + Y+A
Sbjct: 26 DKYVLLSGVRHEIQELKDDLESMNACLRDLAAVGDYHQSQQTRTWMKQVREVAYDA 81
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 284 GLYAPYWRQDARGVICGITED-TNSNHIVK 312
G YA +W + + V GI ED TN N + K
Sbjct: 536 GQYAKFWNEFGKSVKLGIIEDATNRNRLAK 565
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 28.7 bits (61), Expect = 9.5
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 13 AIDEGTSSARFII-FKANSSDVVAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKAVE 71
A ++G+S + F ++S + +H+K++EQ V I+A + ++KA+E
Sbjct: 654 AFNDGSSPRLATLSFSSDSLRKLLFHRKKIEQETGARVSVSDGTVTIVAKTQPIMDKAIE 713
Query: 72 NLVALGGNPEDIIAVGVTNQRETTIVWEQG 101
+ L G I VG T + + + E G
Sbjct: 714 KVEFLVGRE---IEVGRTYKGVVSSIKEYG 740
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,896,220
Number of Sequences: 37544
Number of extensions: 538879
Number of successful extensions: 1257
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1243
Number of HSP's gapped (non-prelim): 14
length of query: 431
length of database: 14,793,348
effective HSP length: 84
effective length of query: 347
effective length of database: 11,639,652
effective search space: 4038959244
effective search space used: 4038959244
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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