Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000572-TA|BGIBMGA000572-PA|IPR000577|Carbohydrate
kinase, FGGY, IPR005999|Glycerol kinase
(431 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.) 246 2e-65
SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5) 75 1e-13
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51) 75 1e-13
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 6e-04
SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07) 36 0.048
SB_21323| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_6531| Best HMM Match : EGF_2 (HMM E-Value=0.0016) 31 1.4
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.3
SB_3154| Best HMM Match : DUF812 (HMM E-Value=1.8) 29 9.6
>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 246 bits (603), Expect = 2e-65
Identities = 136/317 (42%), Positives = 189/317 (59%), Gaps = 28/317 (8%)
Query: 130 NETRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVDPVKNAMKKGTCRFGTVDCWIIWNLTG 189
++T + + +CGLP++ YFSAVKLRWL DN +PV+ A+ G C FGTVD W++WN+TG
Sbjct: 224 DQTNLRPMAESICGLPVNTYFSAVKLRWLIDNSEPVRKAVDDGRCMFGTVDSWLLWNMTG 283
Query: 190 GPNGGKHVTDVTNASRTMLMNIENLNWDPLLLRFFEVPKSVLPDIKSSSEVAVAGAALGW 249
GPNGG+H+TD+TNASRTML+N++ WDP L +F K L D K S+V
Sbjct: 284 GPNGGQHITDITNASRTMLLNLKTQEWDPYLCKFLVTSKQRLWD-KCVSDVE-------- 334
Query: 250 LKENIGLLDTAKESQTIAETATENGSVVFVPAFSGLYAPYWRQDARGVICGITEDTNSNH 309
++ ++D + + N + + + + + Y A VI G+T+ TN H
Sbjct: 335 -RQRTPIIDVDNLALDFISSNVANCDISSLLGMAQVVS-YCTTQASRVIVGLTQFTNRAH 392
Query: 310 IVKAALEAVCFQVRDILDAMNEDCGIPLQVLKVDGGMTGNQLLMQMQADLVGIEVIKAGF 369
I +A LEAVCFQ R++LDAMNEDCGIPL L VDGGMT N+LLMQ+QAD++GI V +
Sbjct: 393 IARATLEAVCFQTRELLDAMNEDCGIPLASLLVDGGMTVNRLLMQLQADILGISVERPTM 452
Query: 370 SESTALGAAMVA-------YWGV----KTDI--QGVPIPMTSGNTYAPKISDD----ERD 412
E+TALGAAM A W + K+ I + M + A +S ERD
Sbjct: 453 PETTALGAAMAAGAAKGIEVWDLNPEDKSQINTEVFDPAMDTSAMLAFSVSSHIVFLERD 512
Query: 413 MRYKQWKMAVERSLGWE 429
+ +WK AV+R++ WE
Sbjct: 513 RHFSKWKKAVQRTMKWE 529
Score = 100 bits (240), Expect = 2e-21
Identities = 42/83 (50%), Positives = 64/83 (77%)
Query: 1 MSQFGKFGPLVGAIDEGTSSARFIIFKANSSDVVAYHQKELEQHFPQEGWVEQDPYAILA 60
MS+F FGPLVGAID+GTSS+RF++F +N+++++A+HQ E + +P+EGWVEQDP +L+
Sbjct: 41 MSEFKDFGPLVGAIDQGTSSSRFLLFASNTAELLAFHQVEFQSIYPKEGWVEQDPKTLLS 100
Query: 61 VVKTCIEKAVENLVALGGNPEDI 83
V C+E+ +++ L NP DI
Sbjct: 101 SVYQCMEQTLQSCKELNINPTDI 123
>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
Length = 85
Score = 74.9 bits (176), Expect = 1e-13
Identities = 36/53 (67%), Positives = 42/53 (79%)
Query: 329 MNEDCGIPLQVLKVDGGMTGNQLLMQMQADLVGIEVIKAGFSESTALGAAMVA 381
MNEDCGIPL L VDGGMT N+LLMQ+QAD++GI V + E+TALGAAM A
Sbjct: 1 MNEDCGIPLASLLVDGGMTVNRLLMQLQADILGISVERPTMPETTALGAAMAA 53
>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
Length = 137
Score = 74.9 bits (176), Expect = 1e-13
Identities = 36/53 (67%), Positives = 42/53 (79%)
Query: 329 MNEDCGIPLQVLKVDGGMTGNQLLMQMQADLVGIEVIKAGFSESTALGAAMVA 381
MNEDCGIPL L VDGGMT N+LLMQ+QAD++GI V + E+TALGAAM A
Sbjct: 1 MNEDCGIPLASLLVDGGMTVNRLLMQLQADILGISVERPTMPETTALGAAMAA 53
>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 42.7 bits (96), Expect = 6e-04
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 336 PLQVLKVDGGMTGNQLLMQMQADLVGIEVIKAGFSESTALGAAMVA--YWGVKTDIQGVP 393
PL + DGG+ N +M++ + L G + + ++ + LGAA +A GV + +
Sbjct: 4 PLCYHRTDGGVCNNDFVMELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVWKSREELR 63
Query: 394 IPMTSGNTYAPKISDDERDMR-YKQWKMAVERSLGW 428
+ + PK S + + Y+QWK AV RS W
Sbjct: 64 AIRCTHALFQPKSSIRTKYAKSYEQWKEAVHRSKSW 99
>SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07)
Length = 582
Score = 36.3 bits (80), Expect = 0.048
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
Query: 102 TGKPLYNAIVWLDMRTSSTIDKLLDTVPNETRNKNYLKPLCGLPLSPYFSAVKLRWLSDN 161
+G P + I+WLD R S + N+T +Y+ G LSP A K+ WL +N
Sbjct: 106 SGDPQKDIIMWLDHRAISQAGAI-----NQT--DHYVLKYVGGLLSPEQQAAKMLWLKEN 158
Query: 162 VDPVKNAMKKGTCRFGTVDCWIIWNLTGGPNGGKHVTDVTNASRTMLMNIENLNWDPLLL 221
+ N K +F + ++ + TG G V D+ N L + L+ L
Sbjct: 159 L----NETWKKAAKFLDLPEYLTYRATGSFQSGISVYDLLNQQAEKLASERGLSSPAFLT 214
Query: 222 RFFEV 226
F +
Sbjct: 215 CHFHM 219
>SB_21323| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 31.5 bits (68), Expect = 1.4
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 153 VKLRWLSDNVDPVKNAMKKGTCRFGTVDCWIIWN--LTGGPNGGKHVTDVTNASRT---- 206
++L + + N DP+ ++ K+G FG++D W N + N K++T + ++
Sbjct: 24 LQLAYSAFNPDPLGHSSKEGPTHFGSLDLWAFCNTFILQSENYRKNITRIFIVFKSKHVE 83
Query: 207 MLMNIENLNWDPLLLR 222
+++ + N+ DP L R
Sbjct: 84 LILPLHNILGDPGLRR 99
>SB_6531| Best HMM Match : EGF_2 (HMM E-Value=0.0016)
Length = 407
Score = 31.5 bits (68), Expect = 1.4
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 172 GTCRFGTVDCWIIWNLTGGPNGGKHVTDVTNASRTMLMNIENLNWDPLLLRFFEVPKSVL 231
G + G V+ WI NLT + + +++ TN+++ M N NW PK V
Sbjct: 185 GVLKQGAVNLWINDNLTSDEDSTESLSNFTNSTQ-MYKNRLVQNWQKF------NPKEVS 237
Query: 232 PDIKSSSEVAVAGAALGWLKENIGLLDTAKESQTIAETAT 271
+ K+ VAGA G+ + +G+ D +S T
Sbjct: 238 NESKTDFSSGVAGANTGFTR--MGVADLQLKSNATGSDNT 275
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 29.1 bits (62), Expect = 7.3
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 27 KANSSDVVAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKAVE 71
K+ S + A H+KELE +E W Q + VK IEKA E
Sbjct: 1410 KSLKSTLTARHEKELEA--ARESWQIQHSQDVENAVKEAIEKAKE 1452
>SB_3154| Best HMM Match : DUF812 (HMM E-Value=1.8)
Length = 815
Score = 28.7 bits (61), Expect = 9.6
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 11 VGAIDEGTSSARFII--FKANSSDVVAYHQKELEQHFPQEGWVEQDPYAILAVV--KTCI 66
+ A EG S++ ++ FK NS+D + KEL Q+ P G + YA L V+ + +
Sbjct: 241 IAATTEGDSASSSMVATFK-NSADGILEIIKELHQYVPFIGAGDARIYADLGVIGDQLSV 299
Query: 67 EKAVENLVAL--GGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNA 109
E+AV +L G P++ + + T + + K L NA
Sbjct: 300 ERAVNIHASLSNGFTPDERLDEQSNKKDNVTALSREVVDKFLLNA 344
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.134 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,299,665
Number of Sequences: 59808
Number of extensions: 573575
Number of successful extensions: 1105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 12
length of query: 431
length of database: 16,821,457
effective HSP length: 84
effective length of query: 347
effective length of database: 11,797,585
effective search space: 4093761995
effective search space used: 4093761995
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -