GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000572-TA|BGIBMGA000572-PA|IPR000577|Carbohydrate
kinase, FGGY, IPR005999|Glycerol kinase
         (431 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical pr...   244   1e-64
U88181-4|AAU05583.1|  299|Caenorhabditis elegans Hypothetical pr...    76   6e-14
U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical pr...    76   6e-14
Z83241-2|CAB05816.2|  435|Caenorhabditis elegans Hypothetical pr...    34   0.17 
Z12017-10|CAA78053.1|  537|Caenorhabditis elegans Hypothetical p...    29   6.4  
Z11505-11|CAA77591.1|  537|Caenorhabditis elegans Hypothetical p...    29   6.4  
U41264-1|AAA82421.1|  929|Caenorhabditis elegans Hypothetical pr...    29   8.4  

>U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical
           protein R11F4.1 protein.
          Length = 502

 Score =  244 bits (597), Expect = 1e-64
 Identities = 115/231 (49%), Positives = 159/231 (68%), Gaps = 7/231 (3%)

Query: 10  LVGAIDEGTSSARFIIFKANSSDVVAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKA 69
           L+ AID+GTSS+RF++F+A++ ++V  HQ E+ Q FP  GWVE DP  +   V +CI K 
Sbjct: 3   LLAAIDQGTSSSRFLVFEADTGELVTSHQIEVRQLFPHGGWVEMDPMELYDTVVSCISKT 62

Query: 70  VENLVALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNAIVWLDMRTSSTIDKLLDTVP 129
           +E L  LG + ++I +VGV NQRET+IVW++ TGKPLYNAIVWLD RTSS  D+ +    
Sbjct: 63  IEKLENLGISADEIKSVGVANQRETSIVWDKETGKPLYNAIVWLDTRTSSLADEAISR-- 120

Query: 130 NETRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVDPVKNAMKKGTCRFGTVDCWIIWNLTG 189
             +++K+  +   GLP+ PYFSA+KL+WL  NV  VK A   G   FGTVD W+IW LTG
Sbjct: 121 TASKSKDEFRAKTGLPIHPYFSALKLKWLFQNVPEVKKAYADGNLMFGTVDTWLIWKLTG 180

Query: 190 GPNGGKHVTDVTNASRTMLMNIENLNWDPLLLRFFEVPKSVLPDIKSSSEV 240
                 +VTDV+NASRT+L+++    W   L  FF++P  +LP+I+SS+EV
Sbjct: 181 A-----YVTDVSNASRTLLLDLHKRKWSTQLCEFFDLPIEILPEIRSSAEV 226



 Score =  134 bits (324), Expect = 1e-31
 Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 3/193 (1%)

Query: 241 AVAGAALGWLKENIGLLDTAKESQTIAETATENGSVVFVPAFSGLYAPYWRQDARGVICG 300
           ++ G  + +L++N   +  AKE + +  +  +     FVP+F+GLY PYW   ARG I G
Sbjct: 310 SIGGNVVRFLRDNFKFISDAKEMEGLCRSVEDTSGAYFVPSFTGLYTPYWDSTARGTILG 369

Query: 301 ITEDTNSNHIVKAALEAVCFQVRDILDAMNEDC--GIPLQVLKVDGGMTGNQLLMQMQAD 358
           +T+ T   HI  AAL AV FQ  +++ A+ +D   G  +  LKVDGGM  N+L  ++QAD
Sbjct: 370 LTQVTQREHICLAALRAVAFQSAEMIAAVEQDLEGGTKVTTLKVDGGMIANKLFNEIQAD 429

Query: 359 LVGIEVIKAGFSESTALGAAMVAYWGV-KTDIQGVPIPMTSGNTYAPKISDDERDMRYKQ 417
           ++G +++    +E +  GAA+    G  +  +       +  N Y P+  D+ R     +
Sbjct: 430 IMGRDIVTPKITEISGWGAAVAGGIGAQQISLDEFLQQSSEDNRYTPQKDDNWRSAELAR 489

Query: 418 WKMAVERSLGWEQ 430
           WK AV+RS GW Q
Sbjct: 490 WKEAVKRSCGWAQ 502


>U88181-4|AAU05583.1|  299|Caenorhabditis elegans Hypothetical
           protein C55B6.1b protein.
          Length = 299

 Score = 75.8 bits (178), Expect = 6e-14
 Identities = 56/188 (29%), Positives = 99/188 (52%), Gaps = 9/188 (4%)

Query: 247 LGWLKENIGLLDTAKESQTIAETATENGSVVFVPAFSGLYAPYWRQDA-RGVICGITEDT 305
           L W  ++IGL +   E+  IA +  ++  VVF+PAF G+  P   + A  G +C I  DT
Sbjct: 113 LHWA-QSIGLFNDVTETSDIALSVNDSNGVVFIPAFCGIQTPINDETACSGFMC-IRPDT 170

Query: 306 NSNHIVKAALEAVCFQVRDILDAMNEDCGI-PLQVLKVDGGMTGNQLLMQMQADLVGIEV 364
              H+V+A LE++ F+V  I  A   +  I     +++ GG++ N  + Q  ADL+G +V
Sbjct: 171 TKVHMVRAILESIAFRVYQIYAAAESEVNINKNSPVRICGGVSNNNFICQCIADLLGRKV 230

Query: 365 IKAGFSESTAL-GAAMVAYW--GVKTDIQGVPIPMTSGNTYAPKISDDERDMR-YKQWKM 420
            +   S+  A  G A++  +  G+ T  + +   +T  + + P     +  ++ ++ WK 
Sbjct: 231 ERMTDSDHVAARGVALLTGFSSGIWTK-EKLRELVTVEDIFTPNYESRKGLLKTFQTWKK 289

Query: 421 AVERSLGW 428
           AV+R LG+
Sbjct: 290 AVDRCLGF 297


>U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical
           protein C55B6.1a protein.
          Length = 523

 Score = 75.8 bits (178), Expect = 6e-14
 Identities = 56/188 (29%), Positives = 99/188 (52%), Gaps = 9/188 (4%)

Query: 247 LGWLKENIGLLDTAKESQTIAETATENGSVVFVPAFSGLYAPYWRQDA-RGVICGITEDT 305
           L W  ++IGL +   E+  IA +  ++  VVF+PAF G+  P   + A  G +C I  DT
Sbjct: 337 LHWA-QSIGLFNDVTETSDIALSVNDSNGVVFIPAFCGIQTPINDETACSGFMC-IRPDT 394

Query: 306 NSNHIVKAALEAVCFQVRDILDAMNEDCGI-PLQVLKVDGGMTGNQLLMQMQADLVGIEV 364
              H+V+A LE++ F+V  I  A   +  I     +++ GG++ N  + Q  ADL+G +V
Sbjct: 395 TKVHMVRAILESIAFRVYQIYAAAESEVNINKNSPVRICGGVSNNNFICQCIADLLGRKV 454

Query: 365 IKAGFSESTAL-GAAMVAYW--GVKTDIQGVPIPMTSGNTYAPKISDDERDMR-YKQWKM 420
            +   S+  A  G A++  +  G+ T  + +   +T  + + P     +  ++ ++ WK 
Sbjct: 455 ERMTDSDHVAARGVALLTGFSSGIWTK-EKLRELVTVEDIFTPNYESRKGLLKTFQTWKK 513

Query: 421 AVERSLGW 428
           AV+R LG+
Sbjct: 514 AVDRCLGF 521



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 14  IDEGTSSARFIIFKANSSDVVAYHQKELEQHFPQ---EGWVEQDPYAILAVVKTCIEKAV 70
           +D GT++ R +++ +   +  +Y +K    +  +   E  VE +P  +       I+KA 
Sbjct: 12  VDIGTTTIRSVVYDSKCKERGSYQEKVNTIYTTRNDDEVLVEIEPEQLFLQFLRVIKKAY 71

Query: 71  ENLVALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNAIVWLDMRTSSTIDKL 124
           E L      P   + VG+  QR + ++W + T K     I W D R ++    L
Sbjct: 72  ETLP-----PNAHVDVGLCTQRNSIVLWNKRTLKEETRIICWNDKRANNKCHNL 120


>Z83241-2|CAB05816.2|  435|Caenorhabditis elegans Hypothetical
           protein T25C8.1 protein.
          Length = 435

 Score = 34.3 bits (75), Expect = 0.17
 Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 28/234 (11%)

Query: 14  IDEGTSSARFIIFKANSSDVVAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKAVENL 73
           ID GT+SA+  I   N  +V+   +K  E        + Q+P  I+  V   +E+   NL
Sbjct: 9   IDIGTTSAK--ICARNGENVILEFKKIYEGDNSDAAGL-QNPKIIIQTVLDLLERTKSNL 65

Query: 74  VALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNAIVWLDMRTSSTIDKLLDTVPNETR 133
            +      +I   G   Q    ++W+Q   +      + +    + TI  L +   + T 
Sbjct: 66  ESRNLKISNIWTCG---QMHGIVMWKQRQNE----IDLGIQNGKTLTISPLYNWTYSSTE 118

Query: 134 NKNYLKPL----CGLPLSPYFSAVKLRWLS-DNVDPVKNAMKKGTCRFGTVDCWIIWNLT 188
              +LK +    CG  L P F  V L +L+  N + + N +  GT     +D +I   LT
Sbjct: 119 LPAFLKTIPKWECG-DLHPGFGLVTLAFLNYSNPEFLTNFIHCGTI----MDLFISI-LT 172

Query: 189 GGPNGGKHVTDVTNASRTMLMNIENLNWDPLLLRFFEVPKSV-LPDIKSSSEVA 241
             P+    +    NA        EN  W   +L F  +PK++ LPDI SSSEV+
Sbjct: 173 QNPDP---LISHHNAHSWGYCT-ENATWQSEILDF--LPKTLKLPDINSSSEVS 220


>Z12017-10|CAA78053.1|  537|Caenorhabditis elegans Hypothetical
           protein R08D7.7 protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 342 VDGGMTGNQLLMQMQADLVGIEVIKAGFSESTALGAAMVAYWG 384
           V GG + N +L+Q+ +D+  + V       S ALG AM + +G
Sbjct: 432 VTGGASRNTVLLQILSDVFEMPVCTIDVDGSAALGGAMRSRYG 474


>Z11505-11|CAA77591.1|  537|Caenorhabditis elegans Hypothetical
           protein R08D7.7 protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 342 VDGGMTGNQLLMQMQADLVGIEVIKAGFSESTALGAAMVAYWG 384
           V GG + N +L+Q+ +D+  + V       S ALG AM + +G
Sbjct: 432 VTGGASRNTVLLQILSDVFEMPVCTIDVDGSAALGGAMRSRYG 474


>U41264-1|AAA82421.1|  929|Caenorhabditis elegans Hypothetical
           protein F10E7.8 protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 117 TSSTIDKLLDTVPNETRNKNYLKPLCGLPLSPYFSAVKLRWLS-DNVDPVKNAMKKGTCR 175
           +SST   + DT  N  +      P  G P+ P      L W S  N   +++ ++KG  +
Sbjct: 421 SSSTPPSIPDTASNFRQGSGEQTPRVGSPVFPVIQKKTLPWRSKTNAQDIEDFIQKGRFK 480

Query: 176 FGTVD 180
           +   D
Sbjct: 481 YFNYD 485


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,682,085
Number of Sequences: 27539
Number of extensions: 446165
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 11
length of query: 431
length of database: 12,573,161
effective HSP length: 83
effective length of query: 348
effective length of database: 10,287,424
effective search space: 3580023552
effective search space used: 3580023552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)