GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000571-TA|BGIBMGA000571-PA|undefined
         (73 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0214 - 28451861-28453069                                         25   5.6  

>05_07_0214 - 28451861-28453069
          Length = 402

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 4   ASTARVMHVLRVRVRPIGRWLR 25
           AS    +H L   VRP+GR+LR
Sbjct: 314 ASIFGPVHALHAAVRPVGRFLR 335


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,039,512
Number of Sequences: 37544
Number of extensions: 15099
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 2
length of query: 73
length of database: 14,793,348
effective HSP length: 53
effective length of query: 20
effective length of database: 12,803,516
effective search space: 256070320
effective search space used: 256070320
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)