GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000570-TA|BGIBMGA000570-PA|IPR001452|Src homology-3,
IPR006020|Phosphotyrosine interaction region
         (422 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   0.76 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   4.1  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   4.1  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   4.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   4.1  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 152 DSSPDSERLQSLGDVDSGHSTAHSPIDTGPKSLSPIPLQQNGNMTTVPHSQLEMLEATHR 211
           D+S  SE+  S+   D  H T H  +D  P++     L  + +   V   Q+ +L +   
Sbjct: 256 DNSNSSEKKSSIQHGDDAHKTHH--LDKNPENTLGTMLSIHPSKLDV--EQMNLLHSNDL 311

Query: 212 GLHKFNPRHHDE 223
            +H+   +HH +
Sbjct: 312 NMHQ---QHHQQ 320


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 98  KLP--EIPKHKKSSILACGQPASLADELGALTGMLVRPGC 135
           K+P  E P    SS L    PAS +  LG+ T  ++   C
Sbjct: 213 KIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 252


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 98  KLP--EIPKHKKSSILACGQPASLADELGALTGMLVRPGC 135
           K+P  E P    SS L    PAS +  LG+ T  ++   C
Sbjct: 2   KIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 41


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 98  KLP--EIPKHKKSSILACGQPASLADELGALTGMLVRPGC 135
           K+P  E P    SS L    PAS +  LG+ T  ++   C
Sbjct: 2   KIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 41


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 98  KLP--EIPKHKKSSILACGQPASLADELGALTGMLVRPGC 135
           K+P  E P    SS L    PAS +  LG+ T  ++   C
Sbjct: 213 KIPPAEFPTTSSSSALESPDPASRSSCLGSNTSSMLSLNC 252


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,420
Number of Sequences: 317
Number of extensions: 4058
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 422
length of database: 114,650
effective HSP length: 59
effective length of query: 363
effective length of database: 95,947
effective search space: 34828761
effective search space used: 34828761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)