GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000570-TA|BGIBMGA000570-PA|IPR001452|Src homology-3,
IPR006020|Phosphotyrosine interaction region
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879...    38   0.020
07_03_0542 - 19256688-19256804,19257181-19257255,19257337-192574...    33   0.57 
05_01_0607 - 5415380-5416289,5416596-5416964,5417866-5418221           31   1.3  
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322     29   7.0  
06_03_1295 + 29100322-29100391,29100774-29100781,29101571-291016...    29   9.3  
05_07_0142 - 27993797-27994037,27994235-27994304,27994429-279944...    29   9.3  

>03_02_0481 +
           8789890-8789949,8790325-8790441,8790532-8790601,
           8790688-8790836,8791520-8791621,8791692-8791892,
           8792589-8792651,8792791-8793009,8793681-8793755,
           8794003-8794101,8794521-8794691
          Length = 441

 Score = 37.5 bits (83), Expect = 0.020
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 213 LHKFNPRHHDEIEVEIGDPIYVQKEAEDLWCEGVNLRTGQQGIFPSAYAVDMDYNDFDPA 272
           +H F+ +   E+ + +GD + V++ A + W EG     G+ G FPSAY   ++  D  PA
Sbjct: 329 IHPFDAQADGELSISVGDYVVVRQVAPNGWSEGE--CKGKAGWFPSAY---VEQRDKAPA 383

Query: 273 NAKVKRERYLLGYMGSVE 290
           + + K      G    VE
Sbjct: 384 SKQSKGRIAAFGMSDWVE 401


>07_03_0542 -
           19256688-19256804,19257181-19257255,19257337-19257426,
           19257506-19257568,19257659-19257856,19257973-19258074,
           19259276-19259424,19260136-19260205,19260460-19260582,
           19261541-19261600
          Length = 348

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 213 LHKFNPRHHDEIEVEIGDPIYVQKEAEDLWCEGVNLRTGQQGIFPSAY 260
           +H FN     E+ + +GD + V++ A + W EG     G  G FP+AY
Sbjct: 287 VHNFNGTTEKELSLIVGDYVVVRQIAPNGWAEGE--CKGVAGWFPAAY 332


>05_01_0607 - 5415380-5416289,5416596-5416964,5417866-5418221
          Length = 544

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 181 PKSLSPIPLQQNGNMTTVPH--SQLEMLEATHRGLHKFNPRHH 221
           P S  PIP+Q N     +PH  +Q+E     H+  +K NP HH
Sbjct: 298 PISQFPIPIQSN----PIPHLQNQIESTRKHHKFTNKTNPSHH 336


>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
          Length = 665

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 162 SLGDVDSGHSTAHSPIDTGPKSLSPIP 188
           +L D D   ++ HS + TGP  ++P+P
Sbjct: 500 TLEDEDKNKTSVHSTVQTGPPVINPLP 526


>06_03_1295 +
           29100322-29100391,29100774-29100781,29101571-29101676,
           29101994-29102264,29102331-29103188,29103280-29103388
          Length = 473

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 12/107 (11%)

Query: 181 PKSLSPIPLQQNGNMTTVPHSQLEMLEATHRGLHKFNPRHHDEIEVEIGDPIYVQ-KEAE 239
           P++LSPIP    G++  +   Q E   +   G  + +  H D+ E   G+ +  + K   
Sbjct: 15  PRALSPIPFVDKGDI-MMNIDQAEDSCSNISGASRSSQSHTDQTEDSKGNELCTRVKAVT 73

Query: 240 DLWC----------EGVNLRTGQQGIFPSAYAVDMDYNDFDPANAKV 276
           D+ C          EG+ L  G +  FP A  V +  N+ D A   V
Sbjct: 74  DVSCGSELQDTCEEEGIILWPGLKMSFPQAPLVRIQDNELDYAYVDV 120


>05_07_0142 -
           27993797-27994037,27994235-27994304,27994429-27994493,
           27994633-27994728,27995275-27995421,27995499-27995623
          Length = 247

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 100 PEIPKHKKSSILACGQPASLADELGALTGMLVRPGCHSRPLL 141
           P +P  ++S++ A G PA+ A   GAL G    P    +PLL
Sbjct: 15  PVLPPLRQSAVRAAGSPAAAALRTGALRGCASLP-LKPQPLL 55


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,764
Number of Sequences: 37544
Number of extensions: 536383
Number of successful extensions: 1117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1115
Number of HSP's gapped (non-prelim): 6
length of query: 422
length of database: 14,793,348
effective HSP length: 84
effective length of query: 338
effective length of database: 11,639,652
effective search space: 3934202376
effective search space used: 3934202376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)