GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000570-TA|BGIBMGA000570-PA|IPR001452|Src homology-3,
IPR006020|Phosphotyrosine interaction region
         (422 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.92 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   6.5  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.4 bits (53), Expect = 0.92
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 153 SSPDSERLQSLGDVDSGH-STAHSPIDTGPKSLSPIPLQQNG 193
           SSPDS R Q +G  +  H +TAH+    G    + +P   +G
Sbjct: 392 SSPDSARHQRIGGCNGLHTTTAHNRFLGGIGGYNGLPTVMSG 433


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 189 LQQNGNMTTVPHSQLEMLEATHRGLHKFNPRH-HDEIEVEIGDPIYVQKEAEDLWCEGVN 247
           ++  GN   +  S+++ L+A+H  + + +P    D +E+   +  Y+     + + + VN
Sbjct: 583 IESLGNYYKIRDSKVKTLDASHNRITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVN 642

Query: 248 L 248
           L
Sbjct: 643 L 643


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 295 KGTGVVCQAV-KKIVGECSTEPTIQPCILEVSDQGLRMVDRSKPERNRNG 343
           K +GV   A    IV +  T+P  + CI+  SDQ +  V R+    N  G
Sbjct: 319 KDSGVAKDAAYDNIVLKLLTKPRARGCIIFGSDQEVAGVMRAVKRCNATG 368


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 192 NGNMTTVPHSQLEMLEATH 210
           NG+ +  PH QL   ++TH
Sbjct: 803 NGDQSQPPHQQLHHHQSTH 821


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,028
Number of Sequences: 429
Number of extensions: 5080
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 422
length of database: 140,377
effective HSP length: 59
effective length of query: 363
effective length of database: 115,066
effective search space: 41768958
effective search space used: 41768958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)