GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000570-TA|BGIBMGA000570-PA|IPR001452|Src homology-3,
IPR006020|Phosphotyrosine interaction region
         (422 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)...    34   0.21 
At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)...    30   2.5  

>At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)
           nearly identical to SH3 domain-containing protein 3
           [Arabidopsis thaliana] GI:16974680; contains Pfam
           profile PF00018: SH3 domain
          Length = 351

 Score = 33.9 bits (74), Expect = 0.21
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 213 LHKFNPRHHDEIEVEIGDPIYVQKEAEDLWCEGVNLRTGQQGIFPSAY 260
           +H F+     E++++ GD I V+K ++  W EG     G+ G FP AY
Sbjct: 289 IHPFSAASEKELDLDKGDYIVVRKVSQTGWAEGE--CKGKAGWFPMAY 334


>At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)
           nearly identical to SH3 domain-containing protein 1
           [Arabidopsis thaliana] GI:16974676; contains Pfam
           profile PF00018: SH3 domain
          Length = 439

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 213 LHKFNPRHHDEIEVEIGDPIYVQKEAEDLWCEGVNLRTGQQGIFPSAY 260
           +H F+ +   E+ + + D + V++ A   W EG     G+ G FPSAY
Sbjct: 374 VHPFDAQAPGELSLAVDDYVIVRQVAGTGWSEGE--YKGKAGWFPSAY 419


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,002,232
Number of Sequences: 28952
Number of extensions: 426814
Number of successful extensions: 847
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 2
length of query: 422
length of database: 12,070,560
effective HSP length: 83
effective length of query: 339
effective length of database: 9,667,544
effective search space: 3277297416
effective search space used: 3277297416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)