Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000569-TA|BGIBMGA000569-PA|undefined
         (140 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    26   1.9  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   5.8  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 35  LNAQNAVDLLPTPYNPDIYLCVTKSPLIKFRNTALGFINNRRILSTNPFYYNVLLC 90
           LNA    DL   PY  ++ + V     I+FRN  L  + +  +  T P Y++V  C
Sbjct: 175 LNADKETDL--KPYVLELAMTVVLD--IEFRNRLLRLLLSSFLTETEPDYFSVGKC 226


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 51  DIYLCVTKSPLIKFRNTALGFINNRRILSTNPFYYNVLLCKRPNVI 96
           DI+  + K+P+I+F +  L ++   ++L+T P  Y+ +  K  + +
Sbjct: 112 DIFKVLVKAPVIQFEDQCLQWL---KMLNTIPPSYSFITIKSKDTV 154


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,724
Number of Sequences: 5004
Number of extensions: 22233
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 2
length of query: 140
length of database: 2,362,478
effective HSP length: 66
effective length of query: 74
effective length of database: 2,032,214
effective search space: 150383836
effective search space used: 150383836
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)