Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000569-TA|BGIBMGA000569-PA|undefined
         (140 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55932| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_58878| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_55932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 53 YLCVTKSPLIKFRNTALGFINNRRILSTNPFYYNVLLCKRP 93
          ++ +T +PL++ R  A   I +  +L T+ +Y NV++   P
Sbjct: 31 HVVITHTPLLRTRCYAHTGITHTSLLRTHRYYANVVITHTP 71


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 53  YLCVTKSPLIKFRNTALGFINNRRILSTNPFYYNVLLCKRPNVIHETISRSRKVSAVTGV 112
           Y  +T + L    N  L   +NR +    PF+Y  ++ +    I  TI     VS + G+
Sbjct: 91  YFVLTSTSLYASLNNLLCLTSNRMVAVLYPFHYEAMITQEK--IQITIGVVWAVSLIEGL 148

Query: 113 IFAAIVY-IAT 122
           +    V+ +AT
Sbjct: 149 LRTFTVFRVAT 159


>SB_58878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 74  NRRILSTNPFYYNVLLCKRPNVIHETISRSRKVSAVTGVIFAAIVYIAT 122
           NR +  TNPF YN L  K   ++   I     VS + G++F    Y +T
Sbjct: 138 NRLVEITNPFRYNALATKTRLLV--IICLLCVVSVIQGLVFNTDKYEST 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,298,853
Number of Sequences: 59808
Number of extensions: 161368
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 3
length of query: 140
length of database: 16,821,457
effective HSP length: 75
effective length of query: 65
effective length of database: 12,335,857
effective search space: 801830705
effective search space used: 801830705
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)