GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000569-TA|BGIBMGA000569-PA|undefined
         (140 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    28   2.4  
08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527     27   7.4  

>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
            26901025-26901247,26901662-26901666,26901796-26901924,
            26902697-26902894,26903138-26903356,26903461-26903699,
            26903797-26903888,26904009-26904224,26904327-26904554,
            26904631-26904722,26904806-26904899,26905475-26905567,
            26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 47   PYNPDIYLCVTKSPLIKFRNTALGFINNRRILSTNPFYYNVLLCKRPNVIHETIS 101
            P  PD+ L  T+  L+ + N +L  +N+R      P +   +  K  N + E IS
Sbjct: 1335 PPQPDVTLVKTRELLLNYLNPSLDLLNSRAAPEVCPEHCISVFNKSVNQLTEEIS 1389


>08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527
          Length = 710

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 32  HRPLNAQNAVDLLPTPYNPDIYLCVTKSPLIKFRNTAL----GFINNRRILST-NPFYYN 86
           H+PLN  + + +L +P +P   + +  SP ++  +  L    G     +++S  N  + +
Sbjct: 90  HQPLNFLSTIKMLESPDSPKCTILIASSPEVEEESYLLYCRPGEDEWTKLVSPFNDIHLS 149

Query: 87  VLLCKRPNVIHETISRSRKVSAVTGVIFAAIVYIATLHRADKPSRSQQGC 136
             +C     I    S    +  V G I   +  + T+   +K +R   GC
Sbjct: 150 AFMCNYEGKICSACSNLVVIDMVDGKI--QLQRVGTIKDEEKYARG-SGC 196


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,553,472
Number of Sequences: 37544
Number of extensions: 120678
Number of successful extensions: 170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 2
length of query: 140
length of database: 14,793,348
effective HSP length: 75
effective length of query: 65
effective length of database: 11,977,548
effective search space: 778540620
effective search space used: 778540620
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)