GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000569-TA|BGIBMGA000569-PA|undefined
         (140 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D89928-1|BAA25182.1|  605|Homo sapiens HKL1 protein.                   29   7.3  

>D89928-1|BAA25182.1|  605|Homo sapiens HKL1 protein.
          Length = 605

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 67  TALGFINNRRILSTNPFYYNVLLCKR------PNVIHETISRSRK--VSAVTGVIF---A 115
           T++  +N  RI+ T   YYN   C +        +IHE I    K     V G  F   +
Sbjct: 420 TSISRLNRHRIIHTGEKYYNCNECGKALSSHSTLIIHERIHTGEKPCKCKVCGKAFRQSS 479

Query: 116 AIVYIATLHRADKPSRSQQGCGK 138
           A++    +H  ++P +  + CGK
Sbjct: 480 ALIQHQRMHTGERPYKCNE-CGK 501


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,266,253
Number of Sequences: 224733
Number of extensions: 629932
Number of successful extensions: 727
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 1
length of query: 140
length of database: 73,234,838
effective HSP length: 83
effective length of query: 57
effective length of database: 54,581,999
effective search space: 3111173943
effective search space used: 3111173943
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)