GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000569-TA|BGIBMGA000569-PA|undefined
         (140 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   2.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   3.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   4.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 81  NPFYYNVLLCKRPNVIHETISRSRKVSAVT 110
           NP  YNV+  K  N   ET   S    ++T
Sbjct: 312 NPILYNVMSAKYRNAFKETCRCSPSNPSIT 341


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 46 TPYNPDIYLCVTKSPLIKFRN 66
          T   PDI   + ++PLIK  N
Sbjct: 33 TKIMPDILTAIGQTPLIKLNN 53


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 4/38 (10%)

Query: 77  ILSTNPFYYNVLLCKRPNVIHETISRSRKVSAVTGVIF 114
           ++ T P YYN+ + K    ++    R  K+S++   IF
Sbjct: 205 LVETEPIYYNLTMVK----LNWPKKRVTKMSSINPCIF 238


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 81  NPFYYNVLLCKRPNVIHETI 100
           NP  YN++  K  N   +TI
Sbjct: 324 NPILYNLMSIKYRNAFKQTI 343


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,972
Number of Sequences: 429
Number of extensions: 1502
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 140
length of database: 140,377
effective HSP length: 52
effective length of query: 88
effective length of database: 118,069
effective search space: 10390072
effective search space used: 10390072
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)