GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000569-TA|BGIBMGA000569-PA|undefined
         (140 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50210.1 68418.m06219 quinolinate synthetase A-related contai...    29   0.88 
At1g01690.1 68414.m00087 expressed protein                             27   3.6  
At5g41560.1 68418.m05050 expressed protein                             27   4.7  
At1g09795.1 68414.m01099 ATP phosphoribosyl transferase 2 (ATP-P...    27   4.7  
At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5...    27   6.2  
At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger) fa...    27   6.2  

>At5g50210.1 68418.m06219 quinolinate synthetase A-related
          contains weak similarity to Swiss-Prot:P11458
          quinolinate synthetase A [Escherichia coli]
          Length = 718

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 40 AVDLLPTPYNPDIYLCVTKSPLIKFRNTALGFINNRRILSTNP 82
          A+ + PT  +    L  T +P   FR T L F + RRI + NP
Sbjct: 4  ALSVAPTSSSLSSLLSRTPNPSPNFRTTHLNFGSQRRIYTINP 46


>At1g01690.1 68414.m00087 expressed protein
          Length = 742

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 110 TGVIFAAIVYIATLHRADKPSRSQQGCG 137
           TG +     Y  TL + + PS SQ+GCG
Sbjct: 695 TGALLFFHAYCITLLKLNGPSSSQRGCG 722


>At5g41560.1 68418.m05050 expressed protein 
          Length = 101

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 30 SQHRPLNAQNAVDLLPTPYNP 50
          SQHRP +  N   ++PT Y P
Sbjct: 17 SQHRPSDPSNPSKMVPTTYRP 37


>At1g09795.1 68414.m01099 ATP phosphoribosyl transferase 2
           (ATP-PRT2) identical to ATP phosphoribosyl transferase
           (AtATP-PRT2) [Arabidopsis thaliana] GI:6683619;
           supporting cDNA gi|6683618|dbj|AB025250.1|
          Length = 413

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 84  YYNVLLCKRPNVIHETISRSRKVSAVTGVIFAAIVYI 120
           YY +++C     ++E++ + R V   +GV+ + + YI
Sbjct: 361 YYAIVICVPKKALYESVQQLRAVGG-SGVLVSPVTYI 396


>At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5)
           contains Pfam profile: PF00249 myb-like DNA binding
           domain; identical to cDNA putative c-myb-like
           transcription factor MYB3R-5 (MYB3R5)  GI:15375300
          Length = 548

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 37  AQNAVDLLPTPYNPDIYLCVTKSPLIKFRNTALGFINNRRI 77
           A + V L+ TP N D  L  T+SP    R  A  F N   I
Sbjct: 390 AASPVSLMTTPCNKDSGLTATRSPESFLREAARTFPNTPSI 430


>At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 226

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 56  VTKSPLIKFRNTALGFINNRRILSTNPFYYNV----LLCKRPNVIHETISRSRKVSAVTG 111
           +  S +  F+  +LG   +R++L  NPF +N      +   P + HE  + S  V  +  
Sbjct: 6   LASSSVQAFQEQSLGGFVSRKLLLHNPFDHNTQRAFAVAPSPLITHEN-NLSGNVLMLLS 64

Query: 112 VIFAAIVYIATLH 124
           V+   I+    LH
Sbjct: 65  VLICGIICCLGLH 77


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,414
Number of Sequences: 28952
Number of extensions: 102322
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 7
length of query: 140
length of database: 12,070,560
effective HSP length: 74
effective length of query: 66
effective length of database: 9,928,112
effective search space: 655255392
effective search space used: 655255392
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)