Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000568-TA|BGIBMGA000568-PA|IPR006202|Neurotransmitter-
gated ion-channel ligand-binding, IPR006029|Neurotransmitter-gated
ion-channel transmembrane region, IPR006028|Gamma-aminobutyric acid A
receptor, IPR002289|Gamma-aminobutyric-acid A receptor, beta subunit,
IPR006201|Neurotransmitter-gated ion-channel
         (374 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...   255   4e-70
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...   118   5e-29
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.67 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   1.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.2  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   6.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.2  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score =  255 bits (624), Expect = 4e-70
 Identities = 121/141 (85%), Positives = 124/141 (87%)

Query: 69  ITLTTVGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACE 128
           I + + GYTMRDIRYKWNEGPNSVGVS+EVSLPQFKVLGHRQRAMEISLTTGNYSRLACE
Sbjct: 1   IEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACE 60

Query: 129 IQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXXXXXNAA 188
           IQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALG              NAA
Sbjct: 61  IQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAA 120

Query: 189 LPKISYVKSIDVYLGTCFVMV 209
           LPKISYVKSIDVYLGTCFVMV
Sbjct: 121 LPKISYVKSIDVYLGTCFVMV 141



 Score = 79.4 bits (187), Expect = 4e-17
 Identities = 35/49 (71%), Positives = 41/49 (83%)

Query: 29 GYTMRDIRYHWKDGHSSVGMSNEVQLPQFRVLGHRQRATVITLTTVGYT 77
          GYTMRDIRY W +G +SVG+SNEV LPQF+VLGHRQRA  I+LTT  Y+
Sbjct: 7  GYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYS 55


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score =  118 bits (285), Expect = 5e-29
 Identities = 54/61 (88%), Positives = 58/61 (95%)

Query: 69  ITLTTVGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACE 128
           I + + GYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHR+RA+EISLTTGNYSRLACE
Sbjct: 183 IEIESFGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRRRAVEISLTTGNYSRLACE 242

Query: 129 I 129
           I
Sbjct: 243 I 243



 Score = 76.2 bits (179), Expect = 4e-16
 Identities = 33/49 (67%), Positives = 41/49 (83%)

Query: 29  GYTMRDIRYHWKDGHSSVGMSNEVQLPQFRVLGHRQRATVITLTTVGYT 77
           GYTMRDIRY W +G +SVG+S+EV LPQF+VLGHR+RA  I+LTT  Y+
Sbjct: 189 GYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRRRAVEISLTTGNYS 237



 Score = 55.6 bits (128), Expect = 5e-10
 Identities = 24/27 (88%), Positives = 26/27 (96%)

Query: 1  MFGDVNISAILDSFSISYDKRVRPNYG 27
          + GDVNISAILDSFS+SYDKRVRPNYG
Sbjct: 35 VLGDVNISAILDSFSVSYDKRVRPNYG 61


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 148 LIVIISWVSFWLNRNATPARVALGXXXXXXXXXXXXXXNAAL 189
           L+ + + +  W+ R A P ++ALG              NA L
Sbjct: 236 LLTVDAAIRGWIQRGADPQKIALGLPVYGKTFTLSSASNAKL 277


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 137 YYLIQIYIPSGLI-VIISWVSFWLN 160
           Y   QI+I   L  VI+ W+SF+LN
Sbjct: 127 YKRTQIFITCELFFVILLWISFFLN 151


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 320 KDISKLLGMTPSDIDKYSRIV 340
           K I  L G T S  DKYSR+V
Sbjct: 707 KAILSLGGWTDSAGDKYSRLV 727


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 131 FVRSMGYY--LIQIYIPSGLIVIISWVSFWLNRNA 163
           F  +  YY  L + Y    ++V I WV +WL  +A
Sbjct: 33  FPTNQKYYPSLAKCYACLLMVVKILWVIYWLQDDA 67


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 153 SWVSFWLNRNATPARVAL 170
           +W S WLN+ A  A+  L
Sbjct: 361 AWQSHWLNKGAEQAKNVL 378


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,956
Number of Sequences: 317
Number of extensions: 3658
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 10
length of query: 374
length of database: 114,650
effective HSP length: 58
effective length of query: 316
effective length of database: 96,264
effective search space: 30419424
effective search space used: 30419424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)