GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000568-TA|BGIBMGA000568-PA|IPR006202|Neurotransmitter-
gated ion-channel ligand-binding, IPR006029|Neurotransmitter-gated
ion-channel transmembrane region, IPR006028|Gamma-aminobutyric acid A
receptor, IPR002289|Gamma-aminobutyric-acid A receptor, beta subunit,
IPR006201|Neurotransmitter-gated ion-channel
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1018 - 10288113-10288387,10288537-10288672                       31   1.1  
02_01_0020 - 127572-127637,127760-127819,127903-128004,128099-12...    31   1.5  
11_04_0407 + 17335773-17335777,17335930-17336635,17336844-173375...    30   2.6  

>08_01_1018 - 10288113-10288387,10288537-10288672
          Length = 136

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 273 KTISQEVRFKVHDPKAHSKGGTLENTINGGRGGADEENPGPHPIHPGKDISKL 325
           + +  EV+F      AH  G T   +  G  GGA   N GP    P K+ + +
Sbjct: 59  RKLGHEVKFPKRMAIAHKGGSTGGGSTGGTTGGASNVNSGPADTRPRKNAAAM 111


>02_01_0020 -
           127572-127637,127760-127819,127903-128004,128099-128194,
           128649-128756,128849-128899,129018-130118
          Length = 527

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 214 LEYATVGYMAKRIQ--MRKQRFVAIQKIASEKKLPECPPVGDPHTLSKMNTLSRCPPSRP 271
           LEY  +G M  R++    K RF+ +QK+    ++ EC    DP   S    +       P
Sbjct: 216 LEYRVIGDMMNRLKDATGKDRFLLLQKLNRAVRIMECREAYDPSNPSNFGVIQHQQVGSP 275

Query: 272 SKTI 275
              +
Sbjct: 276 EDLV 279


>11_04_0407 +
           17335773-17335777,17335930-17336635,17336844-17337542,
           17340710-17340724,17341479-17342126
          Length = 690

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 316 IHPGKDISKLLGMTPSDIDKYSRIVFPVCFVCFNLMYWII 355
           I PG  +S+ +GM  S ++K+SR+V     +      W+I
Sbjct: 560 IAPGDGLSRFVGMLKSLVEKHSRVVTEDGLIIIKATAWLI 599


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,175,100
Number of Sequences: 37544
Number of extensions: 476485
Number of successful extensions: 1124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1122
Number of HSP's gapped (non-prelim): 3
length of query: 374
length of database: 14,793,348
effective HSP length: 83
effective length of query: 291
effective length of database: 11,677,196
effective search space: 3398064036
effective search space used: 3398064036
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)