Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000568-TA|BGIBMGA000568-PA|IPR006202|Neurotransmitter-
gated ion-channel ligand-binding, IPR006029|Neurotransmitter-gated
ion-channel transmembrane region, IPR006028|Gamma-aminobutyric acid A
receptor, IPR002289|Gamma-aminobutyric-acid A receptor, beta subunit,
IPR006201|Neurotransmitter-gated ion-channel
(374 letters)
Database: mosquito
2123 sequences; 516,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY805323-1|AAV66543.1| 459|Anopheles gambiae beta subunit-GABA-... 165 2e-42
AY787484-1|AAV87217.1| 70|Anopheles gambiae GABA receptor subu... 116 1e-27
AJ439353-6|CAD27928.1| 695|Anopheles gambiae putative G-protein... 25 2.6
U42429-1|AAB54088.1| 596|Anopheles gambiae engrailed protein. 25 3.4
U42214-1|AAB58461.1| 596|Anopheles gambiae engrailed protein. 25 3.4
AJ459959-1|CAD31058.1| 462|Anopheles gambiae dopachrome convers... 25 4.5
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein. 24 5.9
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein. 24 5.9
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal... 24 5.9
AF395080-1|AAK97462.1| 537|Anopheles gambiae zinc finger transc... 24 7.8
>AY805323-1|AAV66543.1| 459|Anopheles gambiae beta
subunit-GABA-A-gated chloride channelprotein.
Length = 459
Score = 165 bits (401), Expect = 2e-42
Identities = 104/302 (34%), Positives = 149/302 (49%), Gaps = 15/302 (4%)
Query: 69 ITLTTVGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACE 128
+ + + GYT+ D+ W P GV E LPQF ++G+ + L TG Y RL+
Sbjct: 158 VEIESYGYTVSDVVMYWRSTPIR-GVE-EAELPQFTIIGYETNDRKEKLATGIYQRLSLS 215
Query: 129 IQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXXXXXNAA 188
+ R++GY++ Q Y+PS LIV++SWVSFW+N AT ARVALG ++
Sbjct: 216 FKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSS 275
Query: 189 LPKISYVKSIDVYLGTCFVMVFASLLEYATVGYM---AKRIQMRKQRFVAIQKIASEKKL 245
LP+ISYVK+ID+YL CFV VFA+LLEYA V Y A+ + K+ A +K+ + +
Sbjct: 276 LPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGARAKKKSKKNKEAERKVFGKTEK 335
Query: 246 PECPPVGDPHTLS--KMNTLSRCPPSRPSKTIS-----QEVRFKVHDPKAHSKGGTLENT 298
D L +M+ ++ S TI+ +F A S G + +
Sbjct: 336 TSTCSADDIIELQDIRMSPIASLRNRHYSNTITTTDSVDSAKFPPSFRIARSYGSSNRSG 395
Query: 299 INGGRGGADEENPGPHPIHPGKDISKLLGMTPSD---IDKYSRIVFPVCFVCFNLMYWII 355
+ H I G + K D IDKYSR++FPV F FN YWI
Sbjct: 396 LRYRSSRGQGRPKMLHAIKRGASVIKASIPKIKDVNVIDKYSRVIFPVSFAAFNAGYWIF 455
Query: 356 YL 357
Y+
Sbjct: 456 YV 457
Score = 30.7 bits (66), Expect = 0.068
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 29 GYTMRDIRYHWKDGHSSVGMSNEVQLPQFRVLGHRQRATVITLTTVGYTMRDIRYK 84
GYT+ D+ +W+ + + E +LPQF ++G+ L T Y + +K
Sbjct: 164 GYTVSDVVMYWRS--TPIRGVEEAELPQFTIIGYETNDRKEKLATGIYQRLSLSFK 217
>AY787484-1|AAV87217.1| 70|Anopheles gambiae GABA receptor subunit
protein.
Length = 70
Score = 116 bits (279), Expect = 1e-27
Identities = 55/70 (78%), Positives = 55/70 (78%)
Query: 138 YLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXXXXXNAALPKISYVKS 197
YLIQIYIPSGLIVIISWVSFWLNRNATPARV LG NAALPKISYVKS
Sbjct: 1 YLIQIYIPSGLIVIISWVSFWLNRNATPARVGLGVTTVLTMTTLMSSTNAALPKISYVKS 60
Query: 198 IDVYLGTCFV 207
IDVYLGTCFV
Sbjct: 61 IDVYLGTCFV 70
>AJ439353-6|CAD27928.1| 695|Anopheles gambiae putative G-protein
coupled receptor protein.
Length = 695
Score = 25.4 bits (53), Expect = 2.6
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 340 VFPVCF-VCFNLMYWIIYLHVSDV 362
V PV F +CFN++ W + + S+V
Sbjct: 534 VMPVIFAICFNILNWCMLVRSSNV 557
>U42429-1|AAB54088.1| 596|Anopheles gambiae engrailed protein.
Length = 596
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 273 KTISQEVRFKVHDPKAHSKGGTLENTINGGRGGADEENPGPHPI 316
KT+SQ + + G NGG G P P PI
Sbjct: 379 KTVSQIGQHVAGTGSLNGSGSATNGASNGGSGAPATAKPTPKPI 422
>U42214-1|AAB58461.1| 596|Anopheles gambiae engrailed protein.
Length = 596
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 273 KTISQEVRFKVHDPKAHSKGGTLENTINGGRGGADEENPGPHPI 316
KT+SQ + + G NGG G P P PI
Sbjct: 379 KTVSQIGQHVAGTGSLNGSGSATNGASNGGSGAPATAKPTPKPI 422
>AJ459959-1|CAD31058.1| 462|Anopheles gambiae dopachrome conversion
enzyme protein.
Length = 462
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 30 YTMRDIRYHWKDGHSSVGMSNEVQLPQFR 58
Y ++ I + W DG S+ + N + +FR
Sbjct: 234 YLIQGINFAWDDGIFSIALGNPDPVTKFR 262
>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
Length = 3320
Score = 24.2 bits (50), Expect = 5.9
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 70 TLTTVGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEI 129
TL T GYT+R + Y+ + + V +V L + H + G S++
Sbjct: 629 TLLT-GYTIRTLSYQQSAVLHYVQQEDKVHLKRITQQSHTALEFDYEGPNGAMSKIIYPN 687
Query: 130 QFVRSMGYYLIQI 142
+ Y L+QI
Sbjct: 688 GLIAKFDYTLLQI 700
>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
Length = 3318
Score = 24.2 bits (50), Expect = 5.9
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 70 TLTTVGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEI 129
TL T GYT+R + Y+ + + V +V L + H + G S++
Sbjct: 630 TLLT-GYTIRTLSYQQSAVLHYVQQEDKVHLKRITQQSHTALEFDYEGPNGAMSKIIYPN 688
Query: 130 QFVRSMGYYLIQI 142
+ Y L+QI
Sbjct: 689 GLIAKFDYTLLQI 701
>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
growth factor receptorprotein.
Length = 1433
Score = 24.2 bits (50), Expect = 5.9
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 252 GDPH-TLSKMNTLSRCPPSRPSKTISQE 278
GDP+ + +S CP S P K QE
Sbjct: 713 GDPYDNATTFTCVSNCPASHPYKRFPQE 740
>AF395080-1|AAK97462.1| 537|Anopheles gambiae zinc finger
transcription factor pannier protein.
Length = 537
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 289 HSKGGT-LENTINGGRGGADEENPGPH 314
H GG+ L NGG GG P H
Sbjct: 383 HPTGGSNLPGNNNGGAGGGGSNTPSNH 409
Database: mosquito
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 516,269
Number of sequences in database: 2123
Lambda K H
0.322 0.137 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 385,272
Number of Sequences: 2123
Number of extensions: 15309
Number of successful extensions: 41
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 16
length of query: 374
length of database: 516,269
effective HSP length: 65
effective length of query: 309
effective length of database: 378,274
effective search space: 116886666
effective search space used: 116886666
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)
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