GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000568-TA|BGIBMGA000568-PA|IPR006202|Neurotransmitter-
gated ion-channel ligand-binding, IPR006029|Neurotransmitter-gated
ion-channel transmembrane region, IPR006028|Gamma-aminobutyric acid A
receptor, IPR002289|Gamma-aminobutyric-acid A receptor, beta subunit,
IPR006201|Neurotransmitter-gated ion-channel
         (374 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74420.2 68414.m08622 xyloglucan fucosyltransferase, putative...    34   0.18 
At1g74420.1 68414.m08621 xyloglucan fucosyltransferase, putative...    34   0.18 
At3g07560.1 68416.m00903 glycine-rich protein                          32   0.72 
At1g01650.1 68414.m00083 protease-associated (PA) domain-contain...    29   3.8  
At5g19520.1 68418.m02325 mechanosensitive ion channel domain-con...    29   6.7  
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    29   6.7  

>At1g74420.2 68414.m08622 xyloglucan fucosyltransferase, putative
           (FUT3) identical to SP|Q9CA71 Probable
           fucosyltransferase 3 (EC 2.4.1.-) (AtFUT3) {Arabidopsis
           thaliana}; similar to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 525

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 54  LPQFRVLGHRQRATVITLTTVGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAM 113
           LP  +VL  + +A  I+ ++ GY  + IR  + E P  +G    V  P +K      R M
Sbjct: 392 LPSSQVLNRKSKAVFISSSSPGY-FKSIRDVYWENPTVMGEIISVHKPSYKDYQKTPRNM 450

Query: 114 EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWV 155
           E          L+C    V + G +   + +  GL  +  WV
Sbjct: 451 ESKRAWAEIYLLSCSDALVVT-GLWSSLVEVAHGLGGLKPWV 491


>At1g74420.1 68414.m08621 xyloglucan fucosyltransferase, putative
           (FUT3) identical to SP|Q9CA71 Probable
           fucosyltransferase 3 (EC 2.4.1.-) (AtFUT3) {Arabidopsis
           thaliana}; similar to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 493

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 54  LPQFRVLGHRQRATVITLTTVGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAM 113
           LP  +VL  + +A  I+ ++ GY  + IR  + E P  +G    V  P +K      R M
Sbjct: 360 LPSSQVLNRKSKAVFISSSSPGY-FKSIRDVYWENPTVMGEIISVHKPSYKDYQKTPRNM 418

Query: 114 EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWV 155
           E          L+C    V + G +   + +  GL  +  WV
Sbjct: 419 ESKRAWAEIYLLSCSDALVVT-GLWSSLVEVAHGLGGLKPWV 459


>At3g07560.1 68416.m00903 glycine-rich protein
          Length = 304

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 249 PPVGDPHTLSKMNTLSRCPPSRP 271
           PPV  P+T + MN+LSR  P+RP
Sbjct: 52  PPVNRPNTAANMNSLSRPVPARP 74


>At1g01650.1 68414.m00083 protease-associated (PA) domain-containing
           protein contains protease associated (PA) domain,
           Pfam:PF02225
          Length = 491

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 15/88 (17%)

Query: 2   FGDVNISAILDSFSISYD----KRVRPN--------YGVGYTMRDIRYHWKDGHSSVGMS 49
           FGD+ +  +L +F++ YD    KR++          YG+G  +  I  +  DGH    + 
Sbjct: 389 FGDIILPGLLVTFALRYDWLANKRLKSGYFLGTMSAYGLGLLITYIALNLMDGHGQPALL 448

Query: 50  NEVQ--LPQFRVLGHRQRATVITLTTVG 75
             V   L    VLGH+ R  + TL T G
Sbjct: 449 YIVPFILGTLFVLGHK-RGDLKTLWTTG 475


>At5g19520.1 68418.m02325 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 742

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 249 PPVGDPHTLSKMNTLSRCPPSRPSKTISQEVRFKVHDPKAHSKGGTLENTINGG---RGG 305
           P +  P  L +  +LSR   S+P     ++  F+    +  + G +L      G   RG 
Sbjct: 70  PKIPSPEGLVRRKSLSRSIYSKPKSRFGEQQSFRYDSTREENGGRSLREQFGAGSFARGS 129

Query: 306 ADEENP 311
            D  +P
Sbjct: 130 FDRASP 135


>At4g15180.1 68417.m02328 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 2326

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 230 KQRFVAIQKIASEKKLPECPPVGDPHTLSKMNTLSRCP--PSRPSKTISQEVRFKV--HD 285
           K   +++ ++ S     + PP+ DP   +K+ +  RCP  P+RPS   S   R  V  H 
Sbjct: 886 KASLLSVVRLNSLVVNDQVPPIPDPR--AKVRSKERCPSRPARPSPASSDSKRESVESHS 943

Query: 286 PKAHSKG 292
               S G
Sbjct: 944 QSTASTG 950


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,883,340
Number of Sequences: 28952
Number of extensions: 366461
Number of successful extensions: 810
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 6
length of query: 374
length of database: 12,070,560
effective HSP length: 82
effective length of query: 292
effective length of database: 9,696,496
effective search space: 2831376832
effective search space used: 2831376832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)