Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000567-TA|BGIBMGA000567-PA|IPR001320|Ionotropic
glutamate receptor, IPR001828|Extracellular ligand-binding receptor
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   4.6  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   6.0  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    27   6.0  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   8.0  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    27   8.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   8.0  

>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 21  GRTAFRISLVKRINNASEALEFLLTLEQHDRW-GNKRIV 58
           G+  F+I + K +N+ +E L F+L      RW  NK+++
Sbjct: 823 GKVRFKIEMPK-LNDENEILNFVLETNDGKRWLSNKKVL 860


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 16/97 (16%)

Query: 293  KPFEFGQKEEQFHGFCKDLADLVAKRLGIKYELRITKDNRKTEELFSEGSSRLVDDIVRK 352
            K  E  Q+EE+F  + ++ +  V K LGI    R T  NRK  +   +   R      RK
Sbjct: 1259 KTIEEIQQEEEFQKWWEEESLRVQKELGILKTERDTSTNRKQGQASKQPQRR-----HRK 1313

Query: 353  DADIAVAPLAVTPERERVLDFSEPFLSVDVP-ITHKK 388
            + D  V+        E   +F    L +D+P  THKK
Sbjct: 1314 EKDSKVS--------ESTAEFKS--LPIDIPRTTHKK 1340


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 151 VQVLMDALSRLWRKKPDAFRNALRRAAAGQMNTTKVIDCNPGKN 194
           ++ L+D   + WR    A  NA   +  GQ + TK    N  +N
Sbjct: 407 IRTLLDTWQQEWRILNKAISNAESNSGRGQNSKTKTTSVNLSRN 450


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 379 SVDVPITHKKLQKQLKDTF--SFLKPLSKEIWIILHNEFSIWNSF 421
           S+D P+ H      LK+ +   +L P  K  +I + N+  +WN F
Sbjct: 10  SLDEPVLHDIAIALLKNDYWSLYLSPEQKRKYISILNDTLLWNRF 54


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 418 WNSFWFSLGSFMQQGSDVVPKSLSGRIVGTVWWFF 452
           W S  +   ++ Q+ + +  K +S  IV T+WW F
Sbjct: 71  WTSLVYFYHAWDQKRNKIDFKFISRYIVATLWWMF 105


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 296  EFGQKEEQFHGFCKDLADLVAKRLGIKYELRITKDNRKTEELFSEGSSRLVDDIVRKDAD 355
            E    E++ H    D   LV +   +  EL   +++  T+     GS    D+I R  + 
Sbjct: 1522 EISNLEKEIHELRSDKEGLVQQVQNLSAELAALREHSPTQ-----GSLENADEIARLRSQ 1576

Query: 356  IAVAPLAVTPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLSKE 406
            +         E+E  +  +   L  +   T ++L+ QL +    +K L ++
Sbjct: 1577 LESTKQYYEKEKETEILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQ 1627


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,885
Number of Sequences: 5004
Number of extensions: 92754
Number of successful extensions: 225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 6
length of query: 500
length of database: 2,362,478
effective HSP length: 76
effective length of query: 424
effective length of database: 1,982,174
effective search space: 840441776
effective search space used: 840441776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)