Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000567-TA|BGIBMGA000567-PA|IPR001320|Ionotropic
glutamate receptor, IPR001828|Extracellular ligand-binding receptor
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406... 60 3e-09
07_01_0026 + 190568-190829,192475-194534,194620-195168 59 7e-09
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 55 2e-07
06_01_0618 - 4492057-4492590,4492780-4493192,4493714-4494026,449... 52 8e-07
06_03_1142 + 27961999-27962263,27963735-27965080,27965158-279654... 52 1e-06
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 51 2e-06
09_04_0214 + 15711576-15711891,15712615-15713903,15714410-157151... 50 3e-06
09_04_0199 - 15533619-15534107,15534956-15535362,15535559-155358... 50 4e-06
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 50 6e-06
09_04_0204 - 15565684-15566223,15567272-15567678,15568143-155684... 48 2e-05
09_04_0203 - 15556064-15556561,15557537-15557581,15557852-155582... 46 5e-05
09_04_0213 + 15706638-15707915 46 7e-05
06_01_0631 - 4605111-4605482,4605571-4605903,4605940-4605977,460... 41 0.003
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 39 0.008
06_01_0630 - 4598804-4599295,4599627-4599965,4600002-4600039,460... 39 0.011
06_01_0629 - 4582045-4582140,4582218-4582480,4582584-4582704,458... 39 0.011
09_04_0195 - 15509412-15509580,15510136-15510467,15510494-155109... 38 0.019
06_01_0621 - 4511583-4512116,4512307-4512719,4513236-4513482 38 0.019
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283... 38 0.024
09_04_0196 - 15519175-15519648,15520347-15520748 36 0.057
06_01_0627 - 4567304-4567521,4567649-4567727,4567827-4568165,456... 36 0.099
06_01_0617 - 4483517-4483978,4484093-4484490,4484814-4484898,448... 33 0.53
06_01_0616 + 4467439-4467733,4469232-4469294,4469840-4471176,447... 31 2.1
04_03_0631 - 18190195-18190686,18190866-18191066 31 2.1
01_07_0075 + 40908875-40909069,40909147-40909215,40909363-409094... 30 4.9
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 29 6.5
03_06_0027 + 31131621-31131676,31131681-31132350,31133152-311333... 29 6.5
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324... 29 8.6
02_01_0132 + 950855-950921,951554-951924,952553-952688,952956-95... 29 8.6
>04_04_0940 -
29539138-29539626,29540125-29540531,29540631-29540662,
29540809-29541086,29541164-29542515,29542616-29542874
Length = 938
Score = 60.5 bits (140), Expect = 3e-09
Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 30/172 (17%)
Query: 343 SRLVDDIVRKDADIAVAPLAVTPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKP 402
S L++ I+ D D V + + R +V+DF++P++S + + +++Q ++FL+P
Sbjct: 528 SELINKIITDDFDAVVGDVTIITNRTKVVDFTQPYVSSGLVVL-TSVKRQNSGGWAFLQP 586
Query: 403 LSKEIWII------------------LHNEF------SIWNSFWFSLGS-FMQQGSDVVP 437
+ ++W + +++EF + FWFS + F D
Sbjct: 587 FTIKMWTVTGLFFLIIGTVVWMLEHRINDEFRGPPAKQLITVFWFSFSTLFFAHREDT-- 644
Query: 438 KSLSGRIVGTVWWFFALILVCSYTANLAAYLIVERIAAPMQSIS--YTSTLP 487
+S GR V +W F LI+ SYTA+L + L V+++ +P+ I TS +P
Sbjct: 645 RSTLGRFVIIIWLFVVLIIQSSYTASLTSILTVQQLTSPITGIDSLITSDVP 696
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 59.3 bits (137), Expect = 7e-09
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 28/161 (17%)
Query: 345 LVDDIVRKDADIAVAPLAVTPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLS 404
LV + + D AV +++ R RV+DF++P++ + I ++++ ++FLKP +
Sbjct: 533 LVQRVAEGELDAAVGDISIVTNRTRVVDFTQPYVESGLVIV-TAVRERASSAWAFLKPFT 591
Query: 405 KEIWIILHNEF-----SIW-------------------NSFWFSLGS-FMQQGSDVVPKS 439
+E+W + F +W FWFS + F + V S
Sbjct: 592 REMWAVTGGFFLFVGAVVWVLEHRSNTDFRGSPRKQLVTVFWFSFSTMFFAHRENTV--S 649
Query: 440 LSGRIVGTVWWFFALILVCSYTANLAAYLIVERIAAPMQSI 480
GR+V +W F LI+ SYTA+L + L V++++ +Q +
Sbjct: 650 TLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSTGIQGL 690
>09_04_0202 -
15544498-15545037,15546043-15546449,15546874-15546977,
15547580-15547788,15548092-15549428,15551680-15551941
Length = 952
Score = 54.8 bits (126), Expect = 2e-07
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 34/203 (16%)
Query: 306 GFCKDLADLVAKRL--GIKYELRITKDNRKTEELFSEGS-SRLVDDIVRKDADIAVAPLA 362
GF D+ + KRL + YE +R T S GS V + K D+A+ +
Sbjct: 488 GFSIDIFEEAVKRLPFALPYEYVAFDTSRDT----STGSYDDFVHQVYLKKYDVAIGDIT 543
Query: 363 VTPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLSKEIWIILHNEF-----SI 417
+ R +DF+ P+ V + + + T+ FL+PLS+++W+ + F +
Sbjct: 544 IRHSRMAYVDFTVPYTESGVAMIVPS-KGTVDKTWIFLQPLSRDLWVATISMFFYTGCVV 602
Query: 418 WNSF-------WFSLGSFMQQG-------------SDVVPKSLSGRIVGTVWWFFALILV 457
W W ++MQ G ++ V + LS RIV VW FF LIL
Sbjct: 603 WIELNVVKLTGWKGKMNYMQVGVRLETSFANQLKENERVERILS-RIVLIVWVFFFLILS 661
Query: 458 CSYTANLAAYLIVERIAAPMQSI 480
YTANLA L V+++ + SI
Sbjct: 662 SGYTANLATMLTVQQLKPTINSI 684
>06_01_0618 -
4492057-4492590,4492780-4493192,4493714-4494026,
4495257-4495828,4498324-4498600
Length = 702
Score = 52.4 bits (120), Expect = 8e-07
Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 35/206 (16%)
Query: 300 KEEQFHGFCKDLADLVAKRLGIKYELRITKDNRKTEELFSEGS-SRLVDDIVRKDADIAV 358
K + G+C D+ + R+ + RK E +GS LV ++ AV
Sbjct: 239 KRQNITGYCIDVFNAAMARV---------RPRRKYEFHVFDGSYDDLVRNVSSGKFSAAV 289
Query: 359 APLAVTPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLSKEIWI-----ILHN 413
+ +T +RE +++F+ P+ S V + + + F+KPL++++W+ +
Sbjct: 290 GDVTITADRENLVEFTMPYTSSGVSLLVPEENDSKPIQWIFVKPLTRDLWLATIGFFFYT 349
Query: 414 EFSIW-------------------NSFWFSLGSFMQQGSDVVPKSLSGRIVGTVWWFFAL 454
F +W + +F+ + ++ LS +IV +W F L
Sbjct: 350 GFVVWMIEQPRNPEYQGSSVRQLSTASYFAFSTLTFSHGQIIKSPLS-KIVVVIWCFVVL 408
Query: 455 ILVCSYTANLAAYLIVERIAAPMQSI 480
ILV SYTA+L++ L +R+ ++S+
Sbjct: 409 ILVQSYTASLSSMLTAKRLRPSVKSL 434
>06_03_1142 +
27961999-27962263,27963735-27965080,27965158-27965435,
27965706-27965737,27965830-27966236,27966373-27966858
Length = 937
Score = 52.0 bits (119), Expect = 1e-06
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 31/182 (17%)
Query: 345 LVDDIVRKDADIAVAPLAVTPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLS 404
+++ + D AV A+ R ++ +FS+P++ + I +++ ++FLKP +
Sbjct: 530 IINMVAANSLDAAVGDFAIVRNRTKIAEFSQPYIESGLVIV-VPVKEASSSAWAFLKPFT 588
Query: 405 KE---------------IWIILHN---EF------SIWNSFWFSLGS-FMQQGSDVVPKS 439
E +WI+ H EF + FWFS + F + V S
Sbjct: 589 LEMWCVTGVLFIFVGIVVWILEHRTNEEFRGSPRRQMITIFWFSFSTMFFAHRQNTV--S 646
Query: 440 LSGRIVGTVWWFFALILVCSYTANLAAYLIVERIAAPMQSIS--YTSTLPNIEVRANALL 497
GR V +W F LI+ SYTA+L + L V+++A + + +S LP I +A
Sbjct: 647 ALGRFVLIIWLFVVLIINSSYTASLTSILTVQQLATGITGLDSLLSSALP-IGYQAGKFT 705
Query: 498 RN 499
RN
Sbjct: 706 RN 707
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 50.8 bits (116), Expect = 2e-06
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 30/192 (15%)
Query: 306 GFCKDLADLVAKRLGIKYELRITKDNRKTEELFSEGSSRLVDDIVRKDADIAVAPLAVTP 365
G+C D+ D V K + Y + D E +LVD + + AD V + +T
Sbjct: 491 GYCIDVFDEVMKIM--PYPVSYVYDPYPDSP---ESYEKLVDQVSSQKADAVVGDVTITA 545
Query: 366 ERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLSKEIWII--------------- 410
R +DF+ PF + ++ + FL+PL+ +W+
Sbjct: 546 SRMEEVDFTMPFTESGWSMVVAVQKETSTSMWIFLQPLTTSLWLASLAFFCFTGFVVWVI 605
Query: 411 ---LHNEF--SIWNS----FWFSLGSFMQQGSDVVPKSLSGRIVGTVWWFFALILVCSYT 461
++ EF + W F+FS + + + + +LS R V +W F LIL SYT
Sbjct: 606 EHRINEEFRGTPWQQFGLIFYFSFSTLVFSHKEKLESNLS-RFVVIIWVFVVLILTSSYT 664
Query: 462 ANLAAYLIVERI 473
A+L + L V+++
Sbjct: 665 ASLTSMLTVQKL 676
>09_04_0214 +
15711576-15711891,15712615-15713903,15714410-15715117,
15715369-15715908
Length = 950
Score = 50.4 bits (115), Expect = 3e-06
Identities = 67/304 (22%), Positives = 130/304 (42%), Gaps = 40/304 (13%)
Query: 204 KISRLIKKTDIEGLTGNISFNEEGHRYNFTLNVVEMTVQSAMLKVATWSDV----RGLQL 259
K+ + D +G++G F ++ H + T ++ + + + V W+ RGL
Sbjct: 382 KLQSTLLNIDFQGMSGKFQF-QDMHLLSMTYEIINIVGEEQRV-VGFWTPEFNISRGLNT 439
Query: 260 VSQKHVQLKSPASYDINRTYIVTTVLQEPYLMP-KP-FE-FGQKEE-QFHGFCKDLADLV 315
+ + + + R ++ +P KP F F +KE+ F G C ++ + V
Sbjct: 440 KADVNEIIWPGGETTVPRGWLFPMNKTLKIGVPAKPGFSGFIKKEKYNFTGLCIEVFEEV 499
Query: 316 AKRLGIKYELRITK-DNRKTEELFSEGS-SRLVDDIVRKDADIAVAPLAVTPERERVLDF 373
L K + N K E S G+ L+ + + D D AV + + R +DF
Sbjct: 500 LNGLPYKIPHDYVEFGNGKGE---SNGTYDELIYKVYQNDFDAAVGDITILANRSLYVDF 556
Query: 374 SEPFLSVDVPITHKKLQKQLKDTFSFLKPLSKEIWI-----ILHNEFSIW---------- 418
+ P+ V + ++ K ++FL+PL+ ++W+ + F +W
Sbjct: 557 TLPYTESGVRMLVPVQDQRQKTAWTFLQPLTADLWLGTAAFFVLTGFVVWFIEHRTNEDF 616
Query: 419 ---------NSFWFSLGSFMQQGSDVVPKSLSGRIVGTVWWFFALILVCSYTANLAAYLI 469
+ F+F+ + + + +LS R++ +W F LIL SYTA+L++ L
Sbjct: 617 RGPPVNQIGSVFYFAFSTLVFAHRQKIVNNLS-RVLLVIWLFVVLILQRSYTASLSSILT 675
Query: 470 VERI 473
VE++
Sbjct: 676 VEQL 679
>09_04_0199 -
15533619-15534107,15534956-15535362,15535559-15535862,
15537061-15538397,15539463-15539727
Length = 933
Score = 50.0 bits (114), Expect = 4e-06
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 306 GFCKDLADLVAKRL--GIKYELRITKDNRKTEELFSEGSSRLVDDIVRKDADIAVAPLAV 363
G+ D+ + V KRL I YE ++ DN + + S + V + D A+ + +
Sbjct: 489 GYAIDVFEEVLKRLPYAIPYEY-VSFDNG--QGINSGSYNDFVYQVYLGVYDAAIGDITI 545
Query: 364 TPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLSKEIW-----IILHNEFSIW 418
R +DF+ P+ V + + K+T+ FLKPL+ ++W ++ IW
Sbjct: 546 RYNRTSYVDFTLPYTESGVAMIVPVRDDRNKNTWVFLKPLTTDLWFGSIAFFVYTAIVIW 605
Query: 419 -----NSFWFSLGSFMQQGSDVV----------PKSLSGRIVGTVWWFFALILVCSYTAN 463
++ GSF++Q + S+ R+V VW F L++ SYTAN
Sbjct: 606 LLERRSNNAELTGSFLRQLGIAIYFSFFADRERVDSILSRLVVIVWVFVLLVITSSYTAN 665
Query: 464 LAAYLIVERI 473
L++ L V+++
Sbjct: 666 LSSMLTVQQL 675
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 49.6 bits (113), Expect = 6e-06
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 28/169 (16%)
Query: 345 LVDDIVRKDADIAVAPLAVTPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLS 404
L++ + D A+ +A+ R R++DF++P+ + I + + + ++FLKP +
Sbjct: 535 LIEKVSDNHFDAAIGDIAIVTNRTRLVDFTQPYTESGLIILAPAREIE-SNAWAFLKPFT 593
Query: 405 KEIWIIL------------------HNEF------SIWNSFWFSLGS-FMQQGSDVVPKS 439
++W +L + EF I WFS + F + V S
Sbjct: 594 FQMWSVLGVLFLFVGAVVWVLEHRTNTEFRGPPRQQIMTVCWFSFSTMFFAHRENTV--S 651
Query: 440 LSGRIVGTVWWFFALILVCSYTANLAAYLIVERIAAPMQSISYTSTLPN 488
GR V VW F LI+ SYTA+L + L V+ + + +Q + + P+
Sbjct: 652 ALGRFVLLVWLFVVLIINSSYTASLTSLLTVQELTSGIQGLDSLISSPS 700
>09_04_0204 -
15565684-15566223,15567272-15567678,15568143-15568446,
15568735-15570065,15570769-15570846,15570943-15571027
Length = 914
Score = 48.0 bits (109), Expect = 2e-05
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 355 DIAVAPLAVTPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLSKEIWI----- 409
D A+ + + R +DF+ P+ V + + K+T+ FLKPL+ ++W
Sbjct: 501 DTAIGDITIRYNRTSYVDFTLPYTESGVAMIVPVKDDRDKNTWVFLKPLTTDLWFGSIAF 560
Query: 410 ILHNEFSIW------------NSFWFSLG-----SFMQQGSDVVPKSLSGRIVGTVWWFF 452
++ IW SF+ LG SF V S+ R+V VW F
Sbjct: 561 FIYTAIVIWLLERRINNAELTGSFFRQLGIAIYFSFFADRERV--DSILSRLVVIVWVFV 618
Query: 453 ALILVCSYTANLAAYLIVERI 473
L++ SYTANL++ L V+++
Sbjct: 619 LLVITSSYTANLSSMLTVQQL 639
>09_04_0203 -
15556064-15556561,15557537-15557581,15557852-15558258,
15558538-15558841,15559421-15560757,15561492-15561750
Length = 949
Score = 46.4 bits (105), Expect = 5e-05
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 24/148 (16%)
Query: 355 DIAVAPLAVTPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLSKEIWI----- 409
D A+ + + R +DF+ P+ V + + K+T+ FLKPL+ +W
Sbjct: 535 DAAIGDITIRYNRTSYVDFTLPYTESGVAMIVPVKDDRDKNTWVFLKPLTTGLWFGSIAF 594
Query: 410 ILHNEFSIW------------NSFWFSLG-----SFMQQGSDVVPKSLSGRIVGTVWWFF 452
++ IW SF+ LG SF V S+ R+V VW F
Sbjct: 595 FIYTAVVIWLLERRINNAELTGSFFRQLGIAIYFSFFADRERV--DSILSRLVVIVWVFV 652
Query: 453 ALILVCSYTANLAAYLIVERIAAPMQSI 480
L++ SYTANL++ L V+++ + I
Sbjct: 653 LLVITSSYTANLSSMLTVQQLQPTVTDI 680
>09_04_0213 + 15706638-15707915
Length = 425
Score = 46.0 bits (104), Expect = 7e-05
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 25/138 (18%)
Query: 361 LAVTPERERVLDFSEPFLSVDVPITH--KKLQKQLKDTFSFLKPLSKEIWI-----ILHN 413
+ +T R +DF+ PF++ + + + + + + T+ FLKPL ++W+ +L
Sbjct: 1 MTITAARSSYVDFTLPFMASGIAMVAPLRDVGRGGERTWVFLKPLRYDLWLASAAFLLLT 60
Query: 414 EFSIW-----------NSFWFSLGSFMQQGSDVVP-------KSLSGRIVGTVWWFFALI 455
F++W W LG+ + G + +S R+ VW+F LI
Sbjct: 61 GFAVWFVEHRGNAEFRGPPWHQLGTLLYFGFSTLVFAHREDLRSNLARLAAVVWFFVVLI 120
Query: 456 LVCSYTANLAAYLIVERI 473
L SYTA+L + L V R+
Sbjct: 121 LQSSYTASLTSMLTVPRL 138
>06_01_0631 -
4605111-4605482,4605571-4605903,4605940-4605977,
4606208-4606520,4606622-4607967,4608265-4608334,
4608478-4608555
Length = 849
Score = 40.7 bits (91), Expect = 0.003
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 345 LVDDIVRKDADIAVAPLAVTPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLS 404
LV + K D AV + + R R +DF+ P+ V + T+ FL+PL+
Sbjct: 491 LVSQVFYKKFDAAVGDVTIIANRTRYVDFTMPYTESGVSMLVLSKSDDEPTTWIFLQPLA 550
Query: 405 KEIWI 409
K++WI
Sbjct: 551 KDLWI 555
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 39.1 bits (87), Expect = 0.008
Identities = 50/249 (20%), Positives = 104/249 (41%), Gaps = 33/249 (13%)
Query: 199 FEHGDKISRLIKKTDIEGLTGNISFNEEGHRYNFTLNVVEMTVQSAMLKVATWSDVRGLQ 258
F+ G+ + I+K + G++G + F+ G + +V+ + + + M V WS+ L
Sbjct: 365 FDMGNNLLEKIRKANFTGVSGQVQFDATGDLIHPAYDVINI-IGNGMRTVGYWSNYSSLL 423
Query: 259 LVSQKHVQLKSPAS--------YDI---------NRTYIVTTVLQEPYL-MPKPF---EF 297
V P + YD+ R ++ + +E + +P F EF
Sbjct: 424 STVLPEVLYSEPPNNSLANQHLYDVIWPGQTAQTPRGWVFPSNAKELKIGVPNRFSFREF 483
Query: 298 GQKEE---QFHGFCKDLADLVAKRLGIKYELRITKDNRKTEELFSEGSSRLVDDIVRKDA 354
K+ G+C D+ L + E + ++V+D +
Sbjct: 484 VTKDNVTGSMKGYCIDVFTQALALLPYPVTYKFIPFGGGNENPHYDKLVQMVED---NEF 540
Query: 355 DIAVAPLAVTPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLSKEIWIILH-- 412
D A+ +A+T R DF++PF+ + I ++K + ++++FL+P + ++ +L
Sbjct: 541 DAAIGDIAITMSRTVTTDFTQPFIESGLVIL-APVKKHIVNSWAFLQPFTLQMCQVLQFA 599
Query: 413 --NEFSIWN 419
NE ++N
Sbjct: 600 CVNEVQLFN 608
>06_01_0630 -
4598804-4599295,4599627-4599965,4600002-4600039,
4600145-4600460,4600541-4600794,4601586-4601651,
4603422-4603617
Length = 566
Score = 38.7 bits (86), Expect = 0.011
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 306 GFCKDLADLVAKRLGIKYELRITKDNRKTEELFSEGSSRLVDDIVRKDADIAVAPLAVTP 365
G+C D+ + K+L + N +EL SS + D AV + +T
Sbjct: 134 GYCIDVFEAAVKKLPHHLSYKFVVFNGSYDELVQRVSSG--------NYDAAVGDVTITA 185
Query: 366 ERERVLDFSEPFLSVDVPITHKKLQKQLKDTFS--FLKPLSKEIWI 409
ER DF+ P+ V + ++ K T FLKPL++E+W+
Sbjct: 186 ERTIHADFTMPYTESGVSML-VLMENDSKSTIEWVFLKPLTRELWV 230
>06_01_0629 -
4582045-4582140,4582218-4582480,4582584-4582704,
4582833-4583171,4583208-4583245,4583355-4583670,
4583753-4584006,4586417-4586546
Length = 518
Score = 38.7 bits (86), Expect = 0.011
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 306 GFCKDLADLVAKRLGIKYELRITKDNRKTEELFSEGSSRLVDDIVRKDADIAVAPLAVTP 365
G+C DL + +L + +R +EL SS + D AV + +
Sbjct: 90 GYCIDLFEAAVNKLPYRLIYEFVVFDRSYDELVQSVSSGI--------NDAAVGDITIIA 141
Query: 366 ERERVLDFSEPFLSVDVP-ITHKKLQKQLKDTFSFLKPLSKEIW 408
+R ++F+ P+ V + K + + K + FLKPL+KE+W
Sbjct: 142 DRASHVEFTMPYTESGVSMLVLAKNESESKIEWVFLKPLTKELW 185
>09_04_0195 -
15509412-15509580,15510136-15510467,15510494-15510900,
15511467-15511581,15512711-15514044,15514558-15514819
Length = 872
Score = 37.9 bits (84), Expect = 0.019
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 438 KSLSGRIVGTVWWFFALILVCSYTANLAAYLIVERI 473
K L RIV VW FF L+L SYTA+L + L V+++
Sbjct: 575 KRLISRIVLVVWLFFILVLKSSYTASLTSMLTVQQL 610
>06_01_0621 - 4511583-4512116,4512307-4512719,4513236-4513482
Length = 397
Score = 37.9 bits (84), Expect = 0.019
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 422 WFSLGSFMQQGSDVVPKSLSGRIVGTVWWFFALILVCSYTANLAAYLIVERIAAPMQSI 480
+F+ + ++ LS +IV +W F LILV SYTA+L++ L +R+ ++S+
Sbjct: 72 YFAFSTLTFSHGQIIKSPLS-KIVVVIWCFVVLILVQSYTASLSSMLTAKRLRPSVKSL 129
>06_01_0394 -
2835438-2835896,2836664-2836913,2837197-2837669,
2838941-2840608
Length = 949
Score = 37.5 bits (83), Expect = 0.024
Identities = 40/198 (20%), Positives = 77/198 (38%), Gaps = 33/198 (16%)
Query: 301 EEQFHGFCKDLADLVAKRLGIKYELRITKDNRKTEELFSEGSSRLVDDIVRKDADIAVAP 360
E F GF D+ + L + + N + L K DI V
Sbjct: 513 EPSFEGFSIDVFKAAVEHLPYNFHYKFVSFNGTYDSLMQHD--------YMKSYDILVGD 564
Query: 361 LAVTPERERVLDFSEPFLSVDVPITHKKLQKQLKDTFSFLKPLSKEIWII-----LHNEF 415
+++ R + ++FS+P+ + + ++ FL+P S +W++ L+N
Sbjct: 565 TSISSGRYKFVEFSQPYTESGLVMVVPFSADTWDRSWIFLRPFSPAMWLLIAAVRLYNGV 624
Query: 416 SIW------NS-------------FWFSLGSFMQQG-SDVVPKSLSGRIVGTVWWFFALI 455
+IW N W SL + + G + +S + VW A++
Sbjct: 625 AIWLMERRHNGDYRGGVWKQVTIVLWLSLAALLSPGEKERRLRSSLSKASMAVWLLVAVV 684
Query: 456 LVCSYTANLAAYLIVERI 473
L +YTA+L++ + +R+
Sbjct: 685 LATNYTASLSSLMTAQRL 702
>09_04_0196 - 15519175-15519648,15520347-15520748
Length = 291
Score = 36.3 bits (80), Expect = 0.057
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 440 LSGRIVGTVWWFFALILVCSYTANLAAYLIVERI 473
L RIV +W FF L+L SYTA+L + L V+++
Sbjct: 5 LLSRIVLIIWLFFLLVLTSSYTASLTSMLTVQQL 38
>06_01_0627 -
4567304-4567521,4567649-4567727,4567827-4568165,
4568202-4568239,4568462-4568837
Length = 349
Score = 35.5 bits (78), Expect = 0.099
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 355 DIAVAPLAVTPERERVLDFSEPFLSVDVP-ITHKKLQKQLKDTFSFLKPLSKEIW 408
D AV + +T +R ++F+ P+ V + K + + + FLKPL+KE+W
Sbjct: 59 DAAVGDITITADRASQVEFTMPYTESGVSMLVLAKNESESTTKWVFLKPLTKELW 113
>06_01_0617 -
4483517-4483978,4484093-4484490,4484814-4484898,
4485002-4485838
Length = 593
Score = 33.1 bits (72), Expect = 0.53
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 433 SDVVPKSLSGRIVGTVWWFFALILVCSYTANLAAYLIVERI 473
S + +S +IV +W F +ILV SYTA+L++ L R+
Sbjct: 307 SGQIIRSPMSKIVVVIWCFAVVILVQSYTASLSSMLTTSRL 347
>06_01_0616 +
4467439-4467733,4469232-4469294,4469840-4471176,
4472719-4473086,4473526-4473559,4473978-4474421
Length = 846
Score = 31.1 bits (67), Expect = 2.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 443 RIVGTVWWFFALILVCSYTANLAAYLIVERI 473
++V VW F LI+ SYTANL + L V ++
Sbjct: 574 KLVVIVWVFTVLIITTSYTANLTSMLTVGQL 604
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 31.1 bits (67), Expect = 2.1
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 353 DADIAVAPLAVTPERERVLDFSEPFL-----SVDVPITHKKLQKQLKDTFSFLKPLSKEI 407
++ I +A V R + +D FL D+ +TH + + QL D F+ KPL ++
Sbjct: 156 ESAIKIANNPVQHSRTKHIDIRHHFLRDHETKGDICLTHVRTESQLADIFT--KPLDEKR 213
Query: 408 WIILHNEFSIWNS 420
+ L +EF+I +S
Sbjct: 214 FCELRSEFNILDS 226
>01_07_0075 +
40908875-40909069,40909147-40909215,40909363-40909461,
40909999-40910078,40910162-40910444,40910557-40910580,
40911039-40911700,40912037-40912121,40912203-40912254,
40912336-40912385,40912450-40912497,40912590-40912766
Length = 607
Score = 29.9 bits (64), Expect = 4.9
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 193 KNWVVPFEHGDKISRLIKKTDI--EGLTGNISFNEEGHR-YNFTLNVVEMTVQSAMLKVA 249
+N PF + + R+ DI +GLT ++ ++E ++ T ++ E +Q A
Sbjct: 363 RNGQQPFANDESEPRVDYNGDISGDGLTALVNLSQESSASHHQTESIFETGIQVRYSGAA 422
Query: 250 TWSDVRGLQLVSQKHVQLKSPASYDINRTYIVTTVLQEPYLMPKPFEFGQKEEQFH 305
+ S G L Q+ + + ++ + ++ ++ P PF FG + E H
Sbjct: 423 SVSTPGGSSLQMQESKEHELGSNLETTENTTISLDMKTPLSHFPPFRFGVEFEDVH 478
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 29.5 bits (63), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 441 SGRIVGTVWWFFALILVCSYTA 462
SG I GT+WW AL L+ + A
Sbjct: 245 SGHIFGTIWWGIALNLIAYFVA 266
>03_06_0027 +
31131621-31131676,31131681-31132350,31133152-31133319,
31134771-31134986,31135593-31135909,31136058-31136169,
31136256-31136492,31136582-31137172
Length = 788
Score = 29.5 bits (63), Expect = 6.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 438 KSLSGRIVGTVWWFFALILVCSYTANLAA-----YLIVERIAAPMQ 478
+ ++G I GT+WW F L L + A+ A L ++R+A+ +Q
Sbjct: 344 QKVTGYIFGTIWWGFGLNLFAYFIASHIAGGCWYVLAIQRVASCLQ 389
>07_01_0426 +
3239274-3239386,3239472-3239702,3242516-3242642,
3242729-3242788,3242868-3242960,3243073-3243369,
3243450-3243761,3243857-3244114,3244227-3244375,
3244470-3245102,3245367-3245640,3245736-3245777,
3246332-3246586,3246700-3246711
Length = 951
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 334 TEELFSEGSSRLVDDIVRKDADIAVAPLAVTPERERVLDFSEPFLSVDVPITHKKLQKQL 393
T + F E SS +D+I + + LAV PER L +L + P+ K L
Sbjct: 541 THQYFDERSS--IDNITPQMKEFEAPLLAVLPERANGLTLKNIYLKLLEPLRFSKSTSSL 598
Query: 394 KDT 396
D+
Sbjct: 599 NDS 601
>02_01_0132 +
950855-950921,951554-951924,952553-952688,952956-953092,
953168-953291,954041-954489
Length = 427
Score = 29.1 bits (62), Expect = 8.6
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 114 IVDHSRKIVRDFMEGLRRMDPRFKGTISAKTALMYDGVQVLMDALSRLWRKKP 166
+VD ++ + D + R MDPRF+G ++K A+ Q+ ++ L+ R +P
Sbjct: 315 LVDWAKPYLADRRKLARLMDPRFEGQYNSKQAV--QAAQLTLNCLAGEPRSRP 365
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,555,962
Number of Sequences: 37544
Number of extensions: 551124
Number of successful extensions: 1282
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1235
Number of HSP's gapped (non-prelim): 50
length of query: 500
length of database: 14,793,348
effective HSP length: 85
effective length of query: 415
effective length of database: 11,602,108
effective search space: 4814874820
effective search space used: 4814874820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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