GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000567-TA|BGIBMGA000567-PA|IPR001320|Ionotropic
glutamate receptor, IPR001828|Extracellular ligand-binding receptor
         (500 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    69   9e-14
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   1.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   2.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   5.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 68.9 bits (161), Expect = 9e-14
 Identities = 64/275 (23%), Positives = 122/275 (44%), Gaps = 41/275 (14%)

Query: 176 AAAGQMNTTKVIDCNPGKNWVVP---FEHGDKISRLIKKTDIEGLTGNISFNEEGHRYNF 232
           +A  +MN +K I   P KN       +E G  +   I+K  + G TG ++F++ G R   
Sbjct: 300 SALQEMNKSKSIT-EPPKNCADSGSIWETGKNLFEFIRKQVLSGSTGKVAFDDNGDRIFA 358

Query: 233 TLNVVEMTVQSAMLKVATWSDVRGLQL----VSQKHV----QLKS-PASYDINRTYIVTT 283
             +++ +      + V  +    G +     V++ ++    +L++ P  + I     V T
Sbjct: 359 EYDIINIQENGDQVSVGRYFYPNGTEKMTLSVNESNITWPGRLQTKPEGFMIPTHLKVLT 418

Query: 284 VLQEPYLMPKPFEF------------------GQKEEQF--HGFCKDLADLVAKRLGIKY 323
           + ++P++  +   F                  G+  + F   G+C DL   ++K +   Y
Sbjct: 419 IEEKPFVYVREIAFSESCLPEEILCPHFNVTDGETTKTFCCKGYCMDLLKELSKTINFTY 478

Query: 324 ELRITKDNRKTEELFSEGS-------SRLVDDIVRKDADIAVAPLAVTPERERVLDFSEP 376
            L ++ D +    +    S       + L+ ++V + AD+ VAPL + PER   ++FS+P
Sbjct: 479 SLALSPDGQFGNYIIKNNSVGGKKEWTGLIGELVNERADMIVAPLTINPERAEFIEFSKP 538

Query: 377 FLSVDVPITHKKLQKQLKDTFSFLKPLSKEIWIIL 411
           F    + I  KK  +      SFL+P S  +WI++
Sbjct: 539 FKYQGITILEKKPSRS-STLVSFLQPFSNTLWILV 572



 Score = 60.1 bits (139), Expect = 4e-11
 Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 419 NSFWFSLGSFMQQG-SDVVPKSLSGRIVGTVWWFFALILVCSYTANLAAYLIVERIAAPM 477
           ++ WF+ G  +  G  +  P+S S R++G VW  FA+I+V SYTANLAA+L++ER    +
Sbjct: 612 SAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKL 671

Query: 478 QSIS 481
             I+
Sbjct: 672 TGIN 675


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 185 KVIDCNPGKNWVVPFEHGDKISRLIKKTDIEGLTGN-ISFNEEGH---RYN 231
           ++ D  PG    +    G ++ + ++K D EGL+G+   F++ G    RYN
Sbjct: 491 ELCDGKPGLCDAMKPTKGTELLKYLRKVDFEGLSGDKFKFDKNGDGPARYN 541


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 148 YDGVQVLMDALSRLWRKKPDAFRNALRRAAAGQMNTTKVIDCNPGKNWVVPFEHG 202
           + G++V+    +R+WR     + NA  + ++  +N T VI  + G+  VV   HG
Sbjct: 74  FAGIRVIRVPYNRVWRPDTILYNNADPQYSSAVIN-TNVIVSHTGE--VVWLSHG 125


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 295 FEFGQKEEQFHGFCKDLADLVAKRLGIKYELR 326
           F  G+K+  FH F K   DL  +   ++ E++
Sbjct: 182 FHEGRKQFYFHQFYKQQPDLNYRNSDVREEMK 213


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,848
Number of Sequences: 429
Number of extensions: 5275
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 500
length of database: 140,377
effective HSP length: 61
effective length of query: 439
effective length of database: 114,208
effective search space: 50137312
effective search space used: 50137312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)