Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000566-TA|BGIBMGA000566-PA|IPR001828|Extracellular
ligand-binding receptor
(201 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3... 34 0.076
At5g32440.1 68418.m03825 expressed protein 33 0.17
At2g32400.1 68415.m03959 glutamate receptor family protein (GLR3... 33 0.17
At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3... 32 0.23
At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3... 32 0.23
At2g20000.1 68415.m02338 cell division cycle family protein / CD... 29 1.6
At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3... 29 2.2
At3g33572.1 68416.m04284 hypothetical protein 28 3.8
At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3... 27 8.7
>At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3.1)
(GLR2) identical to putative glutamate receptor GLR2
[Arabidopsis thaliana] gi|4185740|gb|AAD09174; plant
glutamate receptor family, PMID:11379626
Length = 951
Score = 33.9 bits (74), Expect = 0.076
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 139 RAIVDTIIYYGWKDIIYMYDSHDEN 163
RAI + I YYGW D++ +Y+ D +
Sbjct: 181 RAIAEMITYYGWSDVVALYNDDDNS 205
>At5g32440.1 68418.m03825 expressed protein
Length = 264
Score = 32.7 bits (71), Expect = 0.17
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 72 LSRLICNQFARGVFAMLGAVTPESFDTLHSYTNTFQMPFVTPWFPEKVIPPSSGLI-DHA 130
+S ++C + R +F L A +P L ++++ F P IPPSS L+ DH
Sbjct: 1 MSAIVCGK--RSLFEDLAAASPPVSKKLRCFSSSSSSRFSPP------IPPSSSLLLDHL 52
Query: 131 VSMRPDYHRAIVDTII 146
++ PD + I++ I
Sbjct: 53 AAIFPDMDKQILERAI 68
>At2g32400.1 68415.m03959 glutamate receptor family protein (GLR3.7)
(GLR5) identical to Glr5 [Arabidopsis thaliana]
gi|6644388|gb|AAF21042; plant glutamate receptor family,
PMID:11379626
Length = 921
Score = 32.7 bits (71), Expect = 0.17
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 84 VFAMLGAVTPESFDTLHSYTNTFQMPFVTPWFPEKVIPPSSGLIDHAVSMRP---DYHR- 139
V AM+G ++ T+ P V+ P+ + +R D H+
Sbjct: 96 VVAMIGPISSSVAHTISDIAKGLHFPLVS----FAATDPTLSALQFPFFLRTTPNDAHQM 151
Query: 140 -AIVDTIIYYGWKDIIYMYDSHDENG 164
A+VD I +YGWK++I +Y S DE G
Sbjct: 152 SALVDLINFYGWKEVISVY-SDDELG 176
>At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 32.3 bits (70), Expect = 0.23
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 139 RAIVDTIIYYGWKDIIYMYDSHDEN 163
RAI + I YYGW ++I +Y+ D +
Sbjct: 151 RAIAEMISYYGWSEVIALYNDDDNS 175
>At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 32.3 bits (70), Expect = 0.23
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 139 RAIVDTIIYYGWKDIIYMYDSHDEN 163
RAI + I YYGW ++I +Y+ D +
Sbjct: 151 RAIAEMISYYGWSEVIALYNDDDNS 175
>At2g20000.1 68415.m02338 cell division cycle family protein / CDC
family protein low similarity to SP|P30260|CC27_HUMAN
Protein CDC27Hs (Cell division cycle protein 27 homolog)
Homo sapiens; contains Pfam profile PF00515: TPR Domain
Length = 744
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 148 YGWKDIIYMYDSHDENGGFINRKLYSSPGITAESVPPI 185
+G KDI + SH NGG N Y++P A + I
Sbjct: 207 HGLKDISGNFHSHGVNGGVSNMSFYNTPSPVAAQLSGI 244
>At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3.6)
plant glutamate receptor family, PMID:11379626
Length = 903
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 140 AIVDTIIYYGWKDIIYMY--DSHDENG 164
AI D + +YGW++++ +Y D + NG
Sbjct: 152 AIADIVQFYGWREVVAIYGDDDYGRNG 178
>At3g33572.1 68416.m04284 hypothetical protein
Length = 130
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 28 FDQNTEEIQNVFKYAMTMHNQNITGRRFELQAYVDVINTADAFKLSRLI 76
F ++ E IQN FKY + I R E++ D ++ DA +++RL+
Sbjct: 77 FGEHRELIQNAFKYGGDSNRLQINQIRVEIEYLKDRLDKKDA-EIARLM 124
>At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3.3)
plant glutamate receptor family, PMID:11379626
Length = 933
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 140 AIVDTIIYYGWKDIIYMY--DSHDENG-GFINRKLYS 173
AI + +YGWK++I ++ D NG +N KL S
Sbjct: 151 AIASIVDFYGWKEVIAVFVDDDFGRNGVAALNDKLAS 187
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.135 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,927,945
Number of Sequences: 28952
Number of extensions: 198469
Number of successful extensions: 395
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 9
length of query: 201
length of database: 12,070,560
effective HSP length: 78
effective length of query: 123
effective length of database: 9,812,304
effective search space: 1206913392
effective search space used: 1206913392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -