GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000566-TA|BGIBMGA000566-PA|IPR001828|Extracellular
ligand-binding receptor
         (201 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    29   0.63 
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    28   0.83 
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    28   1.1  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   4.4  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.4  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   5.8  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   5.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   5.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   7.7  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 87  MLGAVTPESFDTLHSY----TNTFQMPFVT-PWFPEKVIPPSSGLIDHAVSMRPDYHRAI 141
           ++G VTP S D L S           PF   PW+P+   P    L+D        +H AI
Sbjct: 105 IVGLVTPRSLDYLESMGIKAVYIAGTPFQNLPWYPDGYSPLDFTLLDKHTGTLNQWHEAI 164

Query: 142 V 142
           +
Sbjct: 165 M 165


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 126 LIDHAVSMRPDYHRAIVDTIIYYGWKDIIYMYDSHDENGGF 166
           LI++  SM PD   A   T      +DI+Y+    D   GF
Sbjct: 901 LINNMASMGPDVSNAFFQTYYISLLQDILYVLTDSDHKSGF 941


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 165 GFINRKLYSSPGITAESVPPII 186
           GF + KLYS  G+    VPP+I
Sbjct: 559 GFSSTKLYSGTGVIVSVVPPLI 580


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 124 SGLIDHAVSMRPDYHRAIVDTIIY 147
           S  +D+AV   PD+H   +D + Y
Sbjct: 23  SNFLDYAVDKYPDFHFTCIDKLSY 46


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 3   TQNGSQDIMSASHNANEKRHSDRAIFDQNTEEIQNV-----FKYAMTMHNQNITG--RRF 55
           T   S  +++ S  ANE    D  + D++TE + N       +++MT H Q +    R F
Sbjct: 345 TSEKSDTLITKSELANESEEDDFIVDDEDTEVMMNARSLLPAEFSMTSH-QGLKAHFRNF 403

Query: 56  ELQAYVDVINTADAFKLS 73
            +      I+  DA  +S
Sbjct: 404 MMFIVQQAIDPIDASDIS 421


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 84  VFAMLGAVTPESFDTLHSYTNTFQMPFVTPW 114
           + A LG  +P++   L  Y N++ +P+   W
Sbjct: 247 ISASLGFPSPDAISLLIQYYNSYLLPYEEAW 277


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 16  NANEKRHS--DRAIFDQNTEEIQNVFKYAMTMHN 47
           N+  +++S   R +     +E++ +FKY+M +HN
Sbjct: 559 NSQHEKYSLAQRDVSKSKNKELKELFKYSMGIHN 592


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 117 EKVIPPSSGLIDHAVSMRPDYHRAIVDTIIYYGWKDIIYMY 157
           EKV PP   ++D   ++      ++V+ +     KD+IY Y
Sbjct: 81  EKVNPPKFDMVDDMAALTCLNEPSVVNNLTQRYEKDLIYTY 121


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 105 TFQMPFVTPWFPEKVIPPSSGLIDHAVSMRPD 136
           +FQ    TP  P + +PP SG ++  +S  P+
Sbjct: 630 SFQPRPATPSNPPRSLPPPSGQVNAPMSQTPN 661


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 969,058
Number of Sequences: 5004
Number of extensions: 40717
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 9
length of query: 201
length of database: 2,362,478
effective HSP length: 69
effective length of query: 132
effective length of database: 2,017,202
effective search space: 266270664
effective search space used: 266270664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)