GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000566-TA|BGIBMGA000566-PA|IPR001828|Extracellular
ligand-binding receptor
         (201 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0222 - 1756769-1756801,1756889-1756917,1756975-1757859,175...    29   1.9  
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    29   3.4  
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911...    28   5.9  
04_03_0316 + 14261942-14262506,14262710-14263134                       27   7.9  

>03_01_0222 -
           1756769-1756801,1756889-1756917,1756975-1757859,
           1758244-1759273,1759354-1759401,1759626-1760480
          Length = 959

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 27  IFDQNTEEIQNVFKYAMTMHNQNITGRRFELQAYVDVINTADAFKLSRLICNQFARGVFA 86
           +F+  +     V +  MT    N +    E++   + +   D  + S +  +  ++ V A
Sbjct: 250 VFEPRSRACLGVVELVMTTQKVNYSA---EIENICNALKEVD-LRSSDVSSDPRSKVVDA 305

Query: 87  MLGAVTPESFDTLHSYTNTFQMPFVTPWFP 116
              A+ PE  D L +  +T  +P    W P
Sbjct: 306 SYRAIIPEIMDVLRAVCDTHNLPLAQTWIP 335


>04_04_0585 -
           26386248-26386271,26386510-26386699,26387363-26387463,
           26387554-26387685,26387759-26387857,26387956-26388127,
           26388217-26388512,26388601-26388726,26388848-26389062,
           26389154-26389225,26389299-26389368,26389441-26389517,
           26389605-26389923,26390034-26390225,26390321-26390551,
           26390585-26390950,26392251-26392313,26392394-26392456,
           26392544-26392642,26393497-26393523,26394299-26394358,
           26395230-26396147,26396243-26397268
          Length = 1645

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 159 SHDENGGFINRKLYSSPGITAESVP 183
           SH+ +GG  +R++  SPG  A+SVP
Sbjct: 210 SHERSGGSGSRRVSRSPGRRADSVP 234


>11_04_0442 - 17790811-17790889,17791047-17791114,17791144-17791166,
            17791210-17795913,17797414-17797624,17798478-17798666
          Length = 1757

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 167  INRKLYSSPGITAESVPPIIKC-RHERDCGENV 198
            IN   +SS  IT E+   I+KC RH R C + V
Sbjct: 987  INNFKFSSTAITPEATILILKCIRHVRSCDDFV 1019


>04_03_0316 + 14261942-14262506,14262710-14263134
          Length = 329

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 43  MTMHNQNITGRRFELQAYVDVINTADAFKLSRLICNQFARGVFAMLGAVTPESFDTLHSY 102
           M +H +  T R  +     +V++  DA   SR+IC     G   +LG    ++   L+  
Sbjct: 255 MALHFEGATMRLPQENYVFEVVDDDDAGNSSRIICLAVIEGGEIILGNFQQQNMHVLYDL 314

Query: 103 TNTFQMPFV 111
            N+ ++ FV
Sbjct: 315 QNS-KLSFV 322


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,001,736
Number of Sequences: 37544
Number of extensions: 237298
Number of successful extensions: 445
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 4
length of query: 201
length of database: 14,793,348
effective HSP length: 79
effective length of query: 122
effective length of database: 11,827,372
effective search space: 1442939384
effective search space used: 1442939384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)