GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000566-TA|BGIBMGA000566-PA|IPR001828|Extracellular
ligand-binding receptor
         (201 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35)          29   2.0  
SB_31659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35)
          Length = 1003

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 4/107 (3%)

Query: 61  VDVINTADAFKLSRLICNQFARGVFAMLGAVTPESFDTLHSYTNTFQMPFVTP---WFPE 117
           V+ +N  D  + ++   +   RG  A++G +     + +  + +  Q+P V P       
Sbjct: 36  VEFVNINDDLENTQKAISLVDRGAVAIVGPMELFGVEAIQRFCSELQVPQVAPLTDGLSF 95

Query: 118 KVIPPSSGLIDHAVSMRPDYHRAIVDTIIYYGWKDIIYMYDSHDENG 164
              P    L+    +      +AIVD I +Y WK +  +  S D  G
Sbjct: 96  TYNPCEQQLLTRMSTGYIPLFKAIVDLIRHYKWKKVSIL-TSRDNQG 141


>SB_31659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/87 (19%), Positives = 35/87 (40%)

Query: 27  IFDQNTEEIQNVFKYAMTMHNQNITGRRFELQAYVDVINTADAFKLSRLICNQFARGVFA 86
           IF++  +    VF++A+   N N   +    +  V   +   ++K         ++GV A
Sbjct: 30  IFEKENDIDDRVFRFAVDWVNANNITKDVVFEPVVSYASQYSSYKNIESASKLISQGVLA 89

Query: 87  MLGAVTPESFDTLHSYTNTFQMPFVTP 113
            +G +T             F++P + P
Sbjct: 90  TVGPMTSPDVKVTLGLFKRFKIPLLAP 116


>SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 943

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 19  EKRHSDRAIFDQNTEEIQNVFKYAMTMHNQN 49
           +KR SD+ I D +   + N   +A+T+ N N
Sbjct: 419 KKRKSDQVILDSSDANLHNRIHFAVTLKNHN 449


>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 101 SYTNTFQMPFV--TPWFPEKVIP--PSSGLIDHAVSMRPDYHRAIVDT---IIYYGWKDI 153
           S+++  Q+P +  +  +   V P  PSS     A+S R   +  I D    +  + W D 
Sbjct: 381 SFSSPIQLPNIGSSDHYSVLVTPVIPSSPSTKVALSRRDTRNSCIRDFGGWLTRFKW-DH 439

Query: 154 IYMYDSHDENGGFINRKLYSSPGITAESVPPIIKCR-HERD 193
           IY+ DS  E   + +R LY +     +   P++ CR H  D
Sbjct: 440 IYLLDSCSEKFDYFHRTLYGA----VDRFFPVVSCRAHSSD 476


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,970,853
Number of Sequences: 59808
Number of extensions: 272773
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 4
length of query: 201
length of database: 16,821,457
effective HSP length: 79
effective length of query: 122
effective length of database: 12,096,625
effective search space: 1475788250
effective search space used: 1475788250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)