GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000566-TA|BGIBMGA000566-PA|IPR001828|Extracellular
ligand-binding receptor
         (201 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-16|AAO61447.1|  977|Caenorhabditis elegans Glutamate rece...    48   3e-06
U10438-15|AAA19090.3|  908|Caenorhabditis elegans Glutamate rece...    48   3e-06
AF318606-1|AAK01094.2|  977|Caenorhabditis elegans non-NMDA iono...    48   3e-06
U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic glut...    40   0.001
L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate recep...    40   0.001
U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate recep...    33   0.19 
AL032623-14|CAA21504.1|  465|Caenorhabditis elegans Hypothetical...    29   1.7  
U80029-12|AAB37591.1|  456|Caenorhabditis elegans Hypothetical p...    28   4.0  
AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical ...    28   5.3  

>U10438-16|AAO61447.1|  977|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 2, isoform b protein.
          Length = 977

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 70  FKLSRLICNQFARGVFAMLGAVTPESFDTLHSYTNTFQMPFVTPWFPEKV--IPPSSGLI 127
           + L+R+IC++   G   ML     +++       N  +MP +  W P K   I  ++   
Sbjct: 80  WNLNRIICDEMKLGYMLMLAGTNFKNYGIYEDIANHMKMPLID-WEPSKSENIGKTTENN 138

Query: 128 DHAVSMRPDYHRAIVDTIIYYGWKDIIYMYD 158
               S+ P   + ++D I Y GW+D++Y++D
Sbjct: 139 PMIFSVAPSAEQLLIDYIQYKGWRDVVYIHD 169


>U10438-15|AAA19090.3|  908|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 2, isoform a protein.
          Length = 908

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 70  FKLSRLICNQFARGVFAMLGAVTPESFDTLHSYTNTFQMPFVTPWFPEKV--IPPSSGLI 127
           + L+R+IC++   G   ML     +++       N  +MP +  W P K   I  ++   
Sbjct: 80  WNLNRIICDEMKLGYMLMLAGTNFKNYGIYEDIANHMKMPLID-WEPSKSENIGKTTENN 138

Query: 128 DHAVSMRPDYHRAIVDTIIYYGWKDIIYMYD 158
               S+ P   + ++D I Y GW+D++Y++D
Sbjct: 139 PMIFSVAPSAEQLLIDYIQYKGWRDVVYIHD 169


>AF318606-1|AAK01094.2|  977|Caenorhabditis elegans non-NMDA
           ionotropic glutamate receptorsubunit GLR-2 protein.
          Length = 977

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 70  FKLSRLICNQFARGVFAMLGAVTPESFDTLHSYTNTFQMPFVTPWFPEKV--IPPSSGLI 127
           + L+R+IC++   G   ML     +++       N  +MP +  W P K   I  ++   
Sbjct: 80  WNLNRIICDEMKLGYMLMLAGTNFKNYGIYEDIANHMKMPLID-WEPSKSENIGKTTENN 138

Query: 128 DHAVSMRPDYHRAIVDTIIYYGWKDIIYMYD 158
               S+ P   + ++D I Y GW+D++Y++D
Sbjct: 139 PMIFSVAPSAEQLLIDYIQYKGWRDVVYIHD 169


>U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic
           glutamate receptor subunitprotein.
          Length = 962

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 31  NTEEIQNVFKYAMTMHNQNITGRR---FELQAYVDVIN--TADAFKLSRLICNQFARGVF 85
           N EE+  V   AM   + +I  R    F+L     V+    A ++ +   +C++   G  
Sbjct: 37  NNEEVSRVALKAMEYTSDHINSRDDVPFKLAFDHRVVEEGAAVSWNMVNAVCDELKEGAM 96

Query: 86  AMLGAVTPESFDTLHSYTNTFQMPFV--TPWFPEKVIPPSSGLIDHAVSMRPDYHRAIVD 143
           A+L +V  +  + +   ++  +MP V  T    +       G +   VS+RP     + D
Sbjct: 97  ALLSSVDGKGREGIRGVSDALEMPLVSLTALSNDDHQQQQFGNL-FEVSVRPPISELLAD 155

Query: 144 TIIYYGWKDIIYMYD 158
            I++ GW +++ + D
Sbjct: 156 FIVHKGWGEVLVLID 170


>L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 1 protein.
          Length = 962

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 31  NTEEIQNVFKYAMTMHNQNITGRR---FELQAYVDVIN--TADAFKLSRLICNQFARGVF 85
           N EE+  V   AM   + +I  R    F+L     V+    A ++ +   +C++   G  
Sbjct: 37  NNEEVSRVALKAMEYTSDHINSRDDVPFKLAFDHRVVEEGAAVSWNMVNAVCDELKEGAM 96

Query: 86  AMLGAVTPESFDTLHSYTNTFQMPFV--TPWFPEKVIPPSSGLIDHAVSMRPDYHRAIVD 143
           A+L +V  +  + +   ++  +MP V  T    +       G +   VS+RP     + D
Sbjct: 97  ALLSSVDGKGREGIRGVSDALEMPLVSLTALSNDDHQQQQFGNL-FEVSVRPPISELLAD 155

Query: 144 TIIYYGWKDIIYMYD 158
            I++ GW +++ + D
Sbjct: 156 FIVHKGWGEVLVLID 170


>U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 5 protein.
          Length = 932

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 9/139 (6%)

Query: 26  AIFDQNTE-EIQNVFKYAMTMHNQN-ITGRRFELQAYVDVINTADAFKLSRLICNQFARG 83
           AIF +  +  I+   +Y++   +Q  I G    +  Y+DV++  DA K +   C    + 
Sbjct: 29  AIFREREDAHIEAAVRYSVEWLSQRGIYGDIDLVIEYIDVLDHYDAIKKA---CKMLEKD 85

Query: 84  -VFAMLGAVTPESFDTLHSYTNTFQMPFVTPWFPEKVIPPSSGLIDHAVSMRPDYHRAIV 142
            + A+LG         L   T+   +PF+T    +         ID     RP    A+V
Sbjct: 86  HIVALLGGSHAALNAQLERITDDLDIPFLTA-IDDLRTDMGKSKIDFWP--RPQLFEAVV 142

Query: 143 DTIIYYGWKDIIYMYDSHD 161
           D   ++ W  I+ +Y+  +
Sbjct: 143 DMFTHWRWNRIVLVYEGDE 161


>AL032623-14|CAA21504.1|  465|Caenorhabditis elegans Hypothetical
           protein Y43F8B.13 protein.
          Length = 465

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 54  RFELQAYVDVINTADAFKLSRLICNQFARGVFAMLGAVTPESFDTLHSYTNTFQMPFVTP 113
           +  + ++ D+ N  D   LS   CN F RGV +   A+        H + N + + F+T 
Sbjct: 234 KITITSHSDIFNYMDEV-LSHFPCNLFQRGVLSK--AINHAK----HCHKNFYALGFLTD 286

Query: 114 WFPEKVIPPSSGLIDH 129
            F + ++     + DH
Sbjct: 287 KFRQSILRSMRSMADH 302


>U80029-12|AAB37591.1|  456|Caenorhabditis elegans Hypothetical
           protein T20D4.6 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 112 TPWFPEKVIPPSSGLIDHAVSMRPDYHRAIVDTIIYYGWKD-IIYMYDSHDENGGFINRK 170
           T + P + +P +  LI+H+ S        I+    + G+KD   Y Y   +       R 
Sbjct: 195 TGFVPGETVPLNIHLINHSSSTAKKIEAKILQQCKFTGYKDGATYNYGGDENMSEKAQRI 254

Query: 171 LYSSPGITAESVPPIIKCRHE 191
           ++ +  +  ES   ++  ++E
Sbjct: 255 MFDTKTVVRESQKLVVAAKNE 275


>AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical
           protein Y77E11A.9 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 65  NTADAFKLSRLICNQFARGVFAMLGAVTPESFDTL 99
           +TA +F  +R +    ++GV A+ GAV PE F+ L
Sbjct: 152 STAGSFSYNRSLELCKSKGVDALFGAVYPEDFEQL 186


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,250,543
Number of Sequences: 27539
Number of extensions: 216035
Number of successful extensions: 514
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 9
length of query: 201
length of database: 12,573,161
effective HSP length: 78
effective length of query: 123
effective length of database: 10,425,119
effective search space: 1282289637
effective search space used: 1282289637
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)