Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000565-TA|BGIBMGA000565-PA|IPR003198|Amidinotransferase
         (263 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 182 ELLKRMEREANFSYQTLSVPEDEAANCLYVNGTL 215
           +LLK + +  NF+Y     P+ +  N +  N ++
Sbjct: 465 DLLKELSKTINFTYSLALSPDGQFGNYIIKNNSV 498


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 148 CTPIKMSKGAEHLKKYITVAGDDVLCVGASQEAKELLKRMEREAN 192
           C P   SK  + +KK   V G  V C+      + + K  ++EA+
Sbjct: 37  CVPEIYSKECDEMKKDSAVKGIPVSCISGRDRYECIEKVGKKEAD 81


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 148 CTPIKMSKGAEHLKKYITVAGDDVLCVGASQEAKELLKRMEREAN 192
           C P   SK  + +KK   V G  V C+      + + K  ++EA+
Sbjct: 37  CVPEIYSKECDEMKKDSAVKGIPVSCISGRDRYECIEKVGKKEAD 81


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 148 CTPIKMSKGAEHLKKYITVAGDDVLCVGASQEAKELLKRMEREAN 192
           C P   SK  + +KK   V G  V C+      + + K  ++EA+
Sbjct: 37  CVPEIYSKECDEMKKDSAVKGIPVSCISGRDRYECIEKVGKKEAD 81


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 84  RNFKILKEVLKKDLRQSIVEQDESDAVICGSDVLF 118
           +NF  +    KKDL + I+E+ E+D+   G  ++F
Sbjct: 424 QNFYEVARNKKKDLLKEILER-ENDSGTLGGTLVF 457


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,814
Number of Sequences: 429
Number of extensions: 2466
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 263
length of database: 140,377
effective HSP length: 57
effective length of query: 206
effective length of database: 115,924
effective search space: 23880344
effective search space used: 23880344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)