Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000565-TA|BGIBMGA000565-PA|IPR003198|Amidinotransferase
         (263 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47390.1 68416.m05153 cytidine/deoxycytidylate deaminase fami...    30   1.4  
At1g30860.1 68414.m03774 expressed protein                             30   1.4  
At5g45080.1 68418.m05528 disease resistance protein-related weak...    29   4.2  
At3g62590.1 68416.m07031 lipase class 3 family protein contains ...    29   4.2  
At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containi...    29   4.2  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    29   4.2  
At4g11780.1 68417.m01877 hypothetical protein                          28   5.6  
At1g20780.1 68414.m02602 armadillo/beta-catenin repeat protein-r...    27   9.7  

>At3g47390.1 68416.m05153 cytidine/deoxycytidylate deaminase family
           protein similar to riboflavin-specific deaminase
           [Actinobacillus pleuropneumoniae] GI:1173516; contains
           Pfam profile PF00383: Cytidine and deoxycytidylate
           deaminase zinc-binding region
          Length = 599

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 200 VPEDEAANCLYVNGTLVHRAIEEIPEAFKVFCEKID 235
           V ED   +CL VN  L+HRA   +P +   +   +D
Sbjct: 162 VLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLD 197


>At1g30860.1 68414.m03774 expressed protein
          Length = 730

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 182 ELLKRMEREANFSYQTLSVPEDEAANCLYVNGTLVHRAIEEIP 224
           EL+  M  +     Q +SV  D    CL  N +L H+A +E P
Sbjct: 629 ELISGMRSQIQQLQQEMSVLRDSVKTCLDANASLQHKAHQENP 671


>At5g45080.1 68418.m05528 disease resistance protein-related weak
           similarity to disease resistance protein rps4-RLD
           [Arabidopsis thaliana] GI:5823585; contains Pfam profile
           PF01582: TIR domain
          Length = 392

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 220 IEEIPEAFKVFCEKIDFARRSICLSELAKLKADLSSCSLLV 260
           IEE   A  +F   +DF R   CL+ELAK+K       L+V
Sbjct: 64  IEESELALVIF--SVDFTRSHRCLNELAKIKERKDQGRLIV 102


>At3g62590.1 68416.m07031 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 78  RNEAEARNFKILKEVLKKDLRQSIVEQDESDAVICGSDVLFTGRE 122
           RN   +   K L+ V++K+L+Q   E+D+        ++LF+GR+
Sbjct: 558 RNHDMSSYLKALRHVIRKELKQMKAERDQWLRKFFIINILFSGRD 602


>At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 903

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 77  PRNEAEARNFKILKEVLKKDLRQSIVEQDESDAVICG-SDVLFTGREFFVGICKTTNEAG 135
           P N+     + +L E   K+ R   V     D V+CG +   +T       +C ++    
Sbjct: 106 PENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDA 165

Query: 136 ASLLAETFPEFPCTPIKMSKG 156
           A  L +  PE  C P + + G
Sbjct: 166 ARELFDEMPEKGCKPNEFTFG 186


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 185  KRMEREANFSYQTLSVPEDEAANCLYVNGTLVHRAIEEIPEAFKVFCEKIDFARRSICLS 244
            K +E E     Q LS   DE    ++VNG L  +  + +     +  E  DF R+ + L 
Sbjct: 1019 KILEEELESQCQQLSFSRDETQKLIFVNGELTTKVNQGVNREKVLMVEIEDFHRQVLQLR 1078

Query: 245  E 245
            +
Sbjct: 1079 D 1079


>At4g11780.1 68417.m01877 hypothetical protein
          Length = 473

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 181 KELLKRMEREANFSYQTLSVPEDEAAN 207
           K + + +ER+  +SY TL   EDE+ N
Sbjct: 334 KRIERYVERQEEYSYHTLETEEDESEN 360


>At1g20780.1 68414.m02602 armadillo/beta-catenin repeat
           protein-related / U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 801

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 99  QSIVE-QDESDAVICGSDVLFTGREFFVGICKTTNEAGASLLAE-TFPEFPCTPIKMSKG 156
           Q +VE  DES A++   D + T  +F         EA  SLL E +  E  C  I    G
Sbjct: 169 QVVVEGDDESKAIVAEGDTVRTLVKFLSHEPSKGREAAVSLLFELSKSEALCEKIGSIHG 228

Query: 157 AEHLKKYITVAGDDVLCVGASQEAKELLKRMEREANFSYQTLS 199
           A  L   +T +  +   V   ++A   L+ MER      Q  S
Sbjct: 229 ALILLVGLTSSNSE--NVSIVEKADRTLENMERSEEIVRQMAS 269


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,697,239
Number of Sequences: 28952
Number of extensions: 216283
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 8
length of query: 263
length of database: 12,070,560
effective HSP length: 80
effective length of query: 183
effective length of database: 9,754,400
effective search space: 1785055200
effective search space used: 1785055200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)