Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000565-TA|BGIBMGA000565-PA|IPR003198|Amidinotransferase
(263 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo... 29 0.69
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 27 2.1
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 27 2.8
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 2.8
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 4.8
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||... 26 4.8
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 26 4.8
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 26 6.4
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 6.4
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 8.5
>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 283
Score = 29.1 bits (62), Expect = 0.69
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 160 LKKYITVAGDDVLCVGASQ-EAKELLKRMEREANFSYQTLSVPEDEAANCLYV---NGTL 215
+ K + DV C G + ++K+M R+ NF + + VP A + L + NG L
Sbjct: 134 VSKLFHIVNPDVACFGEKDFQQVAIIKKMVRDLNFFIEIIQVPIVRADDGLALSSRNGYL 193
Query: 216 VHRAIEEIPEAFKV 229
+ P +K+
Sbjct: 194 TSEERKIAPNLYKI 207
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 120 GREFFVGICKTTNEAGASLLAETFPEFPCTPIKMSKGAEHLKKY 163
GR +G C + + +L+E+F E + ++M + E LK Y
Sbjct: 524 GRYIVIGTCHSIEKIPYEILSESFFELKFSELEMDERLELLKIY 567
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 220 IEEIPEAFKVFCEKIDFARRSICLSE 245
+ E+P +K FC D R SIC E
Sbjct: 341 VYEVPTGWKFFCNLFDAKRLSICGEE 366
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.1 bits (57), Expect = 2.8
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 190 EANFSYQTLSVPEDEAANCLYVNGTLVHRAI------EEIPEAFKVFCEKI---DFARR 239
++N SY LS+ DEA N L VN L + + EEI CE+ DFA R
Sbjct: 937 KSNISYDKLSLLRDEAMN-LCVNKELFSKVVGILNNAEEIKNKIATLCERSQEKDFALR 994
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 151 IKMSKGAEHLKKYITVAGDDVLCVGASQEAKELLKR 186
+K K + Y+ +A ++ L +GA+QEA +L R
Sbjct: 819 VKGDKRSVEYCHYLHLAAEEALKIGANQEALDLYNR 854
>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 229 VFCEKIDFARRSICLSELAKLKADLSSCSLLV 260
+F K +R SIC + L LK D C LV
Sbjct: 80 IFTRKCLVSRASICSTPLGDLKVDEDLCQKLV 111
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 150 PIKMSKGAEHLKKYITVAGDDVLCVGASQEAKELLKRMERE--ANFSYQTLS 199
PI +++ + L+KY + GD + V + +EL +++E SYQ LS
Sbjct: 161 PIHLARVCKMLRKYPFLNGDFRMAVKTLDDFRELCSYIDQEKAREESYQVLS 212
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 91 EVLKKDLRQSIVEQDESDAVICGSDVLFTGREFFVGICKTTNEAGASLLAET 142
++LK +R + V DE V G D +EF ICKT + L +ET
Sbjct: 694 KLLKGPIRITFV--DEHGVVEEGIDGGGLTKEFLTSICKTVFDINYGLFSET 743
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 70 GIALLLKPRNEAEARNFKILKEVLKKDLRQ 99
GI +L+ +N+ + NFK + EVL RQ
Sbjct: 313 GIYMLVDEKNKFKTENFKKVLEVLDHSTRQ 342
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 55 ITENIFLDDVAVICHGIALLLKPRNEAEARNFKILKEVLKKD 96
++E++ D A C+ A+ KP N++E + + + VL K+
Sbjct: 214 LSESLEFWDQADYCYNRAVSAKPPNKSELKKYIWNRSVLNKE 255
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.137 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,088,973
Number of Sequences: 5004
Number of extensions: 41301
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 11
length of query: 263
length of database: 2,362,478
effective HSP length: 71
effective length of query: 192
effective length of database: 2,007,194
effective search space: 385381248
effective search space used: 385381248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -