GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000565-TA|BGIBMGA000565-PA|IPR003198|Amidinotransferase
         (263 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425...    31   0.94 
04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276     30   2.2  
01_05_0212 + 19347142-19347444,19348853-19348907,19349117-193492...    30   2.2  
04_01_0149 + 1723712-1723799,1725608-1725775,1726312-1726374,172...    28   8.8  

>06_03_0791 -
           24641350-24641418,24641684-24641965,24642318-24642537,
           24642657-24642776,24643056-24643132,24643220-24643339,
           24644121-24644186,24644265-24644479,24645450-24645582,
           24646562-24646708,24647301-24647596,24648222-24648319,
           24648425-24648471,24649340-24649449,24649663-24649735,
           24650795-24650899
          Length = 725

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 53  GTITENIFLDDVAVICHGIALLLKPRNEAEARNFKILKEVLKK-DLRQSIVEQDESD 108
           G I + + + D AV C GIAL LKP     A +  I+K  ++K  L   +++ D+ D
Sbjct: 670 GKIYKQLNILDKAVFCFGIALDLKP----PAADVAIIKSAMEKVHLPDELMDDDDDD 722


>04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276
          Length = 924

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/47 (34%), Positives = 22/47 (46%)

Query: 150 PIKMSKGAEHLKKYITVAGDDVLCVGASQEAKELLKRMEREANFSYQ 196
           P+ M  G +  KK +    DDV C   S E+    K  +R+A F  Q
Sbjct: 135 PVDMEMGMKPFKKRLVKFADDVSCYTYSTESFAAAKLEKRKAQFDDQ 181


>01_05_0212 + 19347142-19347444,19348853-19348907,19349117-19349292,
            19350033-19350254,19350359-19350597,19351100-19351625,
            19351707-19351980,19352166-19352225,19352362-19353025,
            19353747-19353975,19354071-19354337,19354414-19354602,
            19354771-19355415
          Length = 1282

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 206  ANCLYVNGTLVHRAIEEIPEAFKVF 230
            A C YV    VH+ +   PE F+VF
Sbjct: 983  ALCFYVGAKFVHQGVATFPEVFRVF 1007


>04_01_0149 +
           1723712-1723799,1725608-1725775,1726312-1726374,
           1726511-1726905,1727331-1727502,1727598-1728130
          Length = 472

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)

Query: 18  GFGKDVDPKDVRRQHDCFV 36
           G   DVDPKD    HDCF+
Sbjct: 334 GLAYDVDPKDYIPFHDCFL 352


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,839,964
Number of Sequences: 37544
Number of extensions: 253381
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 4
length of query: 263
length of database: 14,793,348
effective HSP length: 81
effective length of query: 182
effective length of database: 11,752,284
effective search space: 2138915688
effective search space used: 2138915688
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)