GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000565-TA|BGIBMGA000565-PA|IPR003198|Amidinotransferase
         (263 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)              132   4e-31
SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)        29   3.9  
SB_2180| Best HMM Match : DUF293 (HMM E-Value=4.2)                     29   3.9  
SB_5455| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score =  132 bits (318), Expect = 4e-31
 Identities = 85/265 (32%), Positives = 138/265 (52%), Gaps = 11/265 (4%)

Query: 4   YTHALVGKITTGL----QGFGKDVDPKDV---RRQHDCFVRXXXXXXXXXXXXXXXGTIT 56
           YT A+V  + + L    Q   K  +P ++   R+QH  +                   + 
Sbjct: 233 YTRAIVSGVPSSLPANAQSMTKPSEPVNLEKARQQHSAYKATLKQLGLQVIEIPPNEDLP 292

Query: 57  ENIFLDDVAVICHGIALLLKPRNEAEARNFKILKEVLKKDLRQSIVEQDESDAVICGSDV 116
           + +F++D AV     AL+    +E+       +KEVLKK L   +VE  E  A + G DV
Sbjct: 293 DCVFVEDAAVCVDNNALICNLGHESRRGEAAAMKEVLKK-LGFDLVEMKEP-ARLDGGDV 350

Query: 117 LFTGREFFVGICKTTNEAGASLLAETFPEFPCTPIKMSKGAEHLKKYITVAGDDVLCVGA 176
           LFTG+EFFVGI K +N+ GA  LA+ FP  P + I + KG  HLK  +T+   D +    
Sbjct: 351 LFTGKEFFVGISKRSNKEGAETLAKAFPSLPVSTINV-KGHLHLKSTMTMLAPDTIVTSD 409

Query: 177 SQEAKELLKRMEREANFSYQTLSVPEDEAANCLYVNGTLVHRAIEEIPEAFKVFCEKIDF 236
            + A      +  +A + Y+ + VPE  AANCL++NGT+VHR  +EIP+++ ++ + +  
Sbjct: 410 DETALAAWNELVSKAKYQYKRVVVPESFAANCLFINGTVVHRPEKEIPKSYPIY-KGLKD 468

Query: 237 ARRSICLSELAKLKADLSSCSLLVR 261
            +  + +SE  K+   L+  S+L++
Sbjct: 469 PKVEMEISEFHKVDGCLTCRSILLK 493


>SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)
          Length = 311

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 152 KMSKGAEHLKKYITVAGDDVLCVGASQ-EAKELLKRMEREANFSYQTLSVPED 203
           K +K  EHL+K +  A +    + A   E+K  L+R E+E N     + + ED
Sbjct: 17  KYNKRQEHLEKQLKQAEESECALLAELGESKSKLRRAEKELNTLQHNVQIAED 69


>SB_2180| Best HMM Match : DUF293 (HMM E-Value=4.2)
          Length = 289

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)

Query: 139 LAETFPEFPCTPIKMSKGAEHLKKYITVAGDDVLCVGASQEAKELLKRMEREANFSYQTL 198
           +A T    PCT  +M K  EHLK      GD V+  G +      +  ++  A +  +T+
Sbjct: 161 MAATLSVNPCTAYRMLKDFEHLK-----PGDTVIQNGGNSGVGRAV--IQLAAAWGIKTV 213

Query: 199 SVPEDEAANCLYVNGTLVHRAIEEIPEAFKVFCEKIDFARRSICLSELAKLKADLS 254
           ++  D     + V       A   + E F    E  +F +  + L  L + K+D+S
Sbjct: 214 NIVRDRPNLDVMVKELTDLGATHVVTEDFCRTPEMANFMKYRLPLVMLKRAKSDVS 269


>SB_5455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 103 EQDESDAVICGSDVLFTGREFFVGICKTTNEAGASLLAETFPEF---------PCTPIKM 153
           E  E DA+IC S      +  + G C   N  G   + E  P+           C    +
Sbjct: 430 ENVEDDALICLSKNCLKLKTLYAGECNQLNSKGVRPILEGCPDHQNLSIMLDGTCLEQLI 489

Query: 154 SKGAEHLKKYITVAGDDVLCVGASQEAKELL--KRMEREANFSYQTLS 199
           + G   LK+    + D   CV  S  ++ L   K +E+ +  +   LS
Sbjct: 490 TNGTSKLKELTLGSSDTPYCVSLSAISRALFCCKDLEKISFVNIDNLS 537


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,935,403
Number of Sequences: 59808
Number of extensions: 294771
Number of successful extensions: 626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 4
length of query: 263
length of database: 16,821,457
effective HSP length: 81
effective length of query: 182
effective length of database: 11,977,009
effective search space: 2179815638
effective search space used: 2179815638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)